Results for "lines"
Users
About me: I am working as a research fellow at Manipal University. Most of my work involves designing pipelines for genomic sequencing data.Interests: Pipelines77 days ago
- About me: PhD student at University of Gothenburg. Most of my work involves designing or benchmarking pipelines for transcriptome and genomic sequencing data related to epigenetics and cancer.Interests: pipelines
1349 days ago
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Blogs
Bioinformatics PhDs - Cover Letter
...equirements of the job description. Many disciplines have their own conventions an...er or early fall (i.e., before application deadlines) and you had an excellent con...ll be true in your particular case. Many disciplines are sufficiently broad that l...3418 days ago
Important Journals, Blogs and Forums for Bioinformaticians
...ogens, outbreaks, and preparedness, with periodic posts on genomics and bioinformatics-related developments and funding opportunities. In between lines of code: Lex Nederbragt&rsquo...2695 days ago
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Bookmarks
- With PhenoGram researchers can create chomosomal ideograms annotated with lines in color at specific base-pair locations, or colored base-pair to base-pair regions, with or without o...
2668 days ago
GWASpro: A High-Performance Genome-Wide Association Analysis Server
...linear mixed model (LMM). GWASpro is optimized to handle GWAS data that may consist of up to 10 million markers and 10,000 samples from replicable lines or hybrids. GWASpro provides...2028 days ago
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Files
Where to Aproach for R&D Funds in India ?
...do research and development (R&D/ R'n'D/ R+D) to promote innovation in order to produce new goods or services and/or enhance existing product lines. R&D covers all actions i...1098 days ago
Pages
BioRuby :Ruby packages for biologist
...urce Ruby projects. BioRuby project was started in late 2000, and is still in progress. Currently, there are over 80 files and 15,000 lines (except comment-only lines) in our source code. This mig...3999 days ago
Check the Size of a directory & Free disk space.
...e directory names in the output. $ du -cThis gives you a grand total as the last line of the output. So if your directory occupies 30MB the last 2 lines of the output would be 30M.$...3754 days ago
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Top-level pages
Perl one-liner for bioinformatician !!!
...e changing line spacing, numbering lines, doing calculations, converti...ext, deleting and printing certain lines, parsing logs, editing files...'$_.="\n"x4' #Expand single blank lines into 4 consecutive blank line...-pe 's|\n|\r\n|' #Convert unix new lines into DOS new lines:perl -pe '...3680 days ago
Apps for Busy Bioinformatics Researchers !!!
...ls Query GeneRIF interactions, COSMIC mutations, and CNV data for cell lines. Does not require a network...ce or email as attachments. Examine the status of genes in common cell lines. A subset of COSMIC containin...3593 days ago
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Wire posts
News
RNA-Seq Data Pathway and Gene-set Analysis Workflows
...ows“. First cover a full workflow from preparation, reads counting, data preprocessing, gene set test, to pathway visualization in about 40 lines of codes. The same workflow c...3885 days ago
- ...ed, they flow along the strip and are exposed to several invisible test lines made of other antibodies specific to different tags attached to the peptides. If one of these lines becomes visible, it means the...
3773 days ago
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Opportunity posts
- ...ethods. Person should be highly motivated and some experience in cloning and protein purification is desirable. Experience in handling insect cell lines will be an added advantage....
3931 days ago
Bioinformatics @ TATA MEMORIAL CENTRE, NAVI MUMBAI
...ERVIEW 1. JRF* Genome-wide RNAi screen with human pooled tyrosine kinase shRNA libraries in head and neck squamous call carcinoma (HNSCC) cell lines DBT A/C No. 3071, Dr. Amit D...3894 days ago
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Bio-Scripts
- ...5.24.1/lib/perl5:$PERL_BASE/perl-5.24.1/lib/perl5/x86_64-linux:$PERL5LIB" export PATH="$PERL_BASE/perl-5.24.1/bin:$PATH" # You can add those 2 lines to the end of your `~/.bashrc...
2196 days ago
Read lines from input file – print lines that match a regular expression
#!/usr/bin/perl use strict; use warnings; my $line; #read the line-by-line for each line ask if it matches the regex print it if it matches while($line = ){...2969 days ago
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Tags
Frequent Paired-end reads (PE 2x100) mapping command lines
bowtie2 -x hs37m -X 650 -q -1 r1.fq -2 r2.fq -S r12.bowtie2.sam bwa aln hs37m.fa r1.fq > r1.sai && bwa aln hs37m.fa r2.fq > r2.sai \ && bwa sampe hs37m r1.sai r2.sai r1.fq r2.fq > r12.bwa.sam bwa bwasw ../index/bwa/hs37m.fa r12.fq > r12.bwasw.sam ...Tags: Frequent, Paired-end, reads, (PE 2x100), mapping, command, lines
2234 days ago
Comments
Comment on "Sibelia: A comparative genomics tool"
...----- File name = "genomes_permutations.txt". This file contains input sequences represented as permutations of the synteny block. It has two lines for each input sequence: 1...1337 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
...files during the run.The prefix of each input filename will be used as the genome name in the output files (eg. genome1 from genome1.fsa). Header lines in the FASTA files should not...1338 days ago
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