Results for "repeats"
Users
Skills: Repeats1184 days ago
Blogs
List of motif discovery tools !
...- Polyglutamine Database Find information about polyglutamine (polyQ) repeats. Pratt Protein motif and...ics tools at this portal site. T-REKS -- identification of Tandem REpeats in sequences with a K-meanS b...2037 days ago
Understanding reads mapping and flags !
...ds but not a representative reads. Primary Alignment and Secondary Alignment: A read may map ambiguously to multiple locations, e.g. due to repeats. Only one of the multipl...1881 days ago
- +2 more Blogs
Bookmarks
- ...allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome databases. MAKER identifies repeats, aligns ESTs and proteins to...
3054 days ago
YASS :: genomic similarity search tool
...e transition constrained spaced seeds that enable to search more fuzzy repeats, as non-coding DNA/RNA. Anoth...ckground frequencies parameterizable output filter for low complexity repeats reporting of various alignme...2969 days ago
- +17 more Bookmarks
Files
Bioinformatics approach to Boar Taint
...nal list of SNPs was prepared after filtering SNPs on the basis of SNP quality, coverage of SNP allele, functional and structural annotation, and repeats, etc. Selected SNPs will be g...3834 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...embler, that explicitly identifies exact kmer repeats from the shotgun data and rem...ocalizing the assembly reduces the numbers of repeats in the assembly, allows more...angles is an ultimate tool for resolving repeats in genome assemblies. Arachn...2730 days ago
Top-level pages
Commercial and public next-gen-seq (NGS) software
...m next-generation sequencing machines (specifically that of Solexa/Illumina) back to a genome of any size. It seeks to align reads from nonunique repeats using statistics. From author...3563 days ago
Software packages for next gen sequence analysis
...m next-generation sequencing machines (specifically that of Solexa/Illumina) back to a genome of any size. It seeks to align reads from nonunique repeats using statistics. From author...3287 days ago
- +9 more Top-level pages
Wire posts
News
- ...fore comparing to the reference genome, to account for simple sequence repeats that are a regular source of...and creates a de Bruijn graph to span the exon; however, if it detects repeats in the map, it iteratively in...
3590 days ago
Opportunity posts
JRF @ NATIONAL JALMA INSTITUTE OF LEPROSY AND OTHER MYCOBACTERIAL DISEASES
...ttendant in a ICMR funded project entitled "Elucidating the strain differentiation and transmission dynamics of M. leprae through simple sequence repeats ISSR-PCR marker" 1. JRF (o...3886 days ago
Bio-Scripts
Perl script to delete the adjacent repeats !
/usr/bin/perl #Mostly the interview question for bioinfomatician ! #Write a code to delete the adjacent repeated character .... $string='ATTTTTTGGC'; # This sho...1595 days ago
Perl script to find inverted repeats !
#!/usr/bin/perl use strict; use warnings; use Bio::SeqIO; use Bio::Tools::Run::RepeatMasker; my $genome_file = "genome.fasta"; # read genome sequence my...469 days ago
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Tags
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation Kinetics Experiments, and C-Value Paradox ). These sequences were later characterized and placed into five categories: Simple...Tags: Bioinformatics, Search, Repeats, Palindromic, Sequences, Tools, Software
2255 days ago
Steps to find all the repeats in the genome !
To find repeats in a genome from 2 to 9 length using a Perl script, you can use the RepeatMasker tool with the "--length" option[0]. Here's a step-by-step guide: Install RepeatMasker: First, you need to install RepeatMasker on your system. You can download it from the RepeatMasker website[...Tags: Steps, Repeats, Genome, Perl, RepeatMasker
292 days ago
Comments
Comment on "Genome in a Bottle (GIAB) Consortium"
...sed on establishing benchmark large indel and structural variant calls, as well as calls in difficult genomic contexts (e.g., homopolymers/tandem repeats and difficult-to-map regions...1604 days ago
