1890 days ago
Perl one-liner for beginners !
...s//\n/' all.sent.classOnly > all.sent.classOnly.sep Replace all occurrences of pattern1 (...delete every character that is not a letter, white space or line end (replace with nothing) perl -pne&...1435 days ago
2612 days ago
3920 days ago
Genome Assembly Tools and Software - PART2 !!
...e AssemblyD is a software which performed the local and remote genome assembly by several assemblers based on an XML Template which can replace the large command lines requi...2740 days ago
Awesome perl frameworks, libraries and software - PART 4
...h can load FLEX dynamiclly punchdrunker/iOSEmoji - information about unicode6 emoji used in iOS5 openresty/replace-filter-nginx-module - Streaming regular expression replacement in response bodies djabb...2548 days ago
Most Commonly used Awk by Bioinformatician
...y with Perl, awk is simpler in many practical cases. Why awk? You can replace a pipeline of 'stuff | grep |...calculate the sum of column 2 and 3 and put it at the end of a row or replace the first column: awk '{prin...3967 days ago
2768 days ago
Find and replace ambiguous characters in fasta file with Perl and Bioperl
...DERR $s->id(), "\t$ambig\n"; if (defined($opt_m)) { $thisSeq = ReplaceAmbiguousChar($thisSeq, $opt_m...[ATGC-]//g; $string =~ s/\s+//g; return $string; } sub ReplaceAmbiguousChar { my ($stri...2969 days ago
2963 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...will also print the folder perl is installing the package into. If you want to be extra-sure, you can also install most Perl packages via conda. Replace the ':' by '-', lower-case ev...470 days ago
Comment on "Short-read assembly using Spades !"
...input data is stored. Then, enter the following command: spades.py -1 <read1.fastq> -2 <read2.fastq> -o <output_dir> Replace read1.fastq and read2.fastq w...475 days ago