Results for "Biological Programming"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several per...em, you can use "yum" for the rescue. Dont worry biological data cruncher, this is true w...for DNA sequencinglibbiojava-java - Java API to biological...3994 days ago
Five unique traits of effective computational biologist
...and tools to analyse gigantic biological data. Being a great biological programmer or bioinformaticia...lex than that of your limited programming rules. 4. Do not search, res...be passionate about more than programming — you must also be exci...3994 days ago
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Bookmarks
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3994 days ago
Online Courses for biology beginners
Most of the time we face some biological problems while analysing our data computationally. This bookmark is being created to provide list of all free online courses at one place. If you know any other good online cource resources to learn biology please let me know.3988 days ago
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Files
- In an attempt to find a good Linux reference for bioinformatician and BOL readers, I was unsuccessful at finding a decent one on the Internet. So, we decided to make a cheat sheet for biological programmers.
3997 days ago
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural information on alpha helical...an architecture that corresponds closely to the biological systems. The model is enriche...embrane part. The closed association between the biological...3989 days ago
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Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways ...ul tools and was easy to use, whereas SPSS is for non-programmers and R need programming skills. I am wondering what o...3996 days ago
Does anyone have Nanopore latest updates?
There was a lot of buzz about Oxford Nanopore Technologies® is developing the GridION™ system and mini...oteins. With a broad patent portfolio, the Oxford Nanopore pipeline includes biological...3857 days ago
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Pages
Bio++ : C Language libraries for your biological need
...importantly, it supports object-oriented programming in a familiar setting and fr...ally interested in C/C++ language for the biological programming? If yes there is good news fo...io++. J Now the time has been change, the biological programmers are ready to use t...3992 days ago
- Ruby was created by Yukihiro Matsumoto, wh...nguage that balanced functional programming with imperative programming Ruby is a dynamic, reflectiv...d Lisp. Ruby supports multiple programming paradigms, including function...ticle/5915 Ruby Documentation: Programming Rubyhttp://ruby-doc.org/docs/...
3991 days ago
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Top-level pages
- ...desire to explore and understand biological machanism at genomic level, s...sotware/tools bioinformatician/ biological programmers need to expertise in any one one the programming language. However, sometime...al is aimed to introduce you new biological programming languages with their packages...
3992 days ago
- ...o enable the discovery of new biological insights as well as to create...dge from computer analysis of biological data. These can consist of th...gical data (e.g., the dynamic programming algorithm for sequence align...rmatics has a large impact on biological research. Giant research proje...
3991 days ago
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Wire posts
News
- Google provide free class for people with a little bit of programming experience who want to learn Python. The google python class...n Google to introduce Python to people who have just a little programming experience. Find more @ ...
3996 days ago
Bioinformatics: Introduction to PERL
This course is aimed at those new to programming and provides an introduction to programming using Perl. By the end of this course, attendees should be able to write simple Perl programs and to understand more c...3995 days ago
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Opportunity posts
- ...a master degree in Bioinformatics or allied subjects and should have biological database development experien...e in Bioinformatics or allied subjects and should be proficient in C-programming language. Must be familiar wi...
3993 days ago
- ...ools developed both in academia and industry. However, this biological information does not equal biological knowledge. As biology becomes...ing techniques. Basic molecular biology knowledge and basic programming skills are a prerequisite for...
3993 days ago
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ResearchLabs posts
- Statistical functional genomics in experimental medicine The genome projects and the accelerated development of high...f this revolution requires the marriage of researchers from mathematical and biological...
3992 days ago
- Our research aims to better understand how living systems respond to chemical agents. A key aspect of our approach in...lation, discovery and evaluation of scientific hypotheses the simulation of biological...
3992 days ago
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Fun
Perl Poem: Parse it in both Perl and English!
Larry's, er, corpus has fortunately been overshadowed by that of the reigning Perl Poet...cal Conference, entitled "Camels and Needles: Computer Poetry Meets the Perl Programming Language". (The paper is avai...3963 days ago
Golden Rules of Bioinformatics
...uss it. :P Stastics is a systematic method of comming to the wrong conclusion with confidence. Bug is a undocumented feature in programming languages. Good biological programmer goes on summer holi...3960 days ago
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Video
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Data Air date: Wednesday, February 0...ctures, can be used to attack challenges in sequencing, medical genomics and biological...3946 days ago
- lecture 9, Chem. C100, Spring 2013, UCLA
3953 days ago
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Bio-Scripts
Needleman-Wunsch Algorithm in Perl
#!/usr/bin/perl # USAGE: perl nw.pl HEAGAWGHEE PAWHEAE BLOSUM50.txt -8 # See: "Biological sequence anaysis" Durbin et al. ed. CUP 1998, Pg. 19 # Needleman-Wunsch global alignment algo (GOT...2949 days ago
Implementation of biological random mutation with Perl
#!/usr/bin/perl -w use strict; use warnings; #sequence for a better recognition my $DNA="AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA \ n";...2945 days ago
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Polls
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a programming language which is compatible...3575 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3570 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of...atics is the center of modern biological research and if a researcher wants to discover new biological insights by evaluating the gl...ormatician must have a strong biological background in his/her researc...2406 days ago
Groups
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parser...to discuss the features, uses, and application of BioJava in biological...3947 days ago
...ge) is a family of high-level, general-purpose, interpreted, dynamic programming languages. Perl was original...to make report processing easier. But, nowadays perl is the heart of biological/genomic string handlings. Th...3997 days ago
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Comments
Comment on "Which are the best statistical programming languages to study for a bioinformatician?"
The recent article on Nature explain it better ... R becoming the most popular language amongst biological researchers http://www.nature.com/news/programming-tools-adventures-with-r-1.16609?3452 days ago
Comment on "Which of the following programming language is best for a bioinformatics beginner?"
...operl.org/wiki/Main_Page), one of the first biological module repositories that incr...to do phylogenetic analysis. There are some biological software that uses Perl such...ng like the manual) or very complex (object programming using Moose). Some Bioperl mo...3575 days ago
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