Comment on "Perl Module Installation"
To install BioPerl on a macOS system, you can follow these steps: Open the Terminal app on your macOS...l::VERSION\n"' If there are any issues with the installation, you can try searching for solutions...473 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...sed on their evolutionary relationship or biological interest. Obtain the genome...e synteny between the genomes by comparing the location and order of the ortholog...nary relationships between species. The analysis can provide insights into the ge...474 days ago
Comment on "Basic command-line to run BLAST"
...BLAST (Basic Local Alignment Search Tool) is a...nce should be in a FASTA format and can be entered directly into the...Choose the database: BLAST searches can be performed against many di...or searching sequence databases and can be used for many different t...474 days ago
Comment on "CovCal: Coverage / Read Count Calculator"
Sequencing coverage is defined as the average number of reads that covers each base of the reference genome. Estimating the sequencing coverage is very...634 days ago
Comment on "Phylogenetic for Bioinformatics"
Nice evolutionary distance caculation methods @ https://www.cs.rice.edu/~nakhleh/COMP571/Slides/Phylogenetics-DistanceMethods-Full.pdf641 days ago
Comment on "Phylogenetic for Bioinformatics"
Nice tutorial https://www.zoology.ubc.ca/~bio336/Bio336/Lectures/Lecture14/Overheads.html642 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...nimap2 –x ava-ont \ ../../trimming_practical/nanofilt/nanofilt_trimmed.fastq \ ../../trimming_practical/nanofilt/nanofilt_trimmed.fa...p.paf.gz miniasm -f \ ../../trimming_practical/nanofilt/nanofilt_trimmed.fa...847 days ago
Comment on "Spades tutorial PDF"
Spades tutorial http://cab.spbu.ru/files/release3.11.1/manual.html#yaml859 days ago
Comment on "CrossMap: program for genome coordinates conversion between different assemblies"
https://www.researchgate.net/publication/357925950_FastRemap_A_Tool_for_Quickly_Remapping_Reads_between_Genome_Assemblies881 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
If you are on Conda, you can try installing cpamn https://anaconda.org/bioconda/perl-app-cpanminus and then cpanm install <name>988 days ago