Results for "Graph-theory based studies"
Bio-Scripts
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP...ased... Evaluation of genome assembly software based on long readsBy BioStar 409 d...e design, analysis, and interpretation of data for studies in public health and medicine...1565 days ago
Commands to install conda in Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ mkdir jittmp jit@jit-HP-Pro-3335-MT:~/Downloads$ cd jittmp/ jit@jit-HP-Pro-3335-MT:~/Downloads/jittmp$ curl -O https://repo.anac...1565 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 ---...
1496 days ago
- (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen so...
1269 days ago
Create random 10000 SNPs in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq SGDref.R64-2-1.dups.fa -snp_...[Sun Jan 10 16:05:57 2021] Introducing random SNPs based on the following parameters:...muSNP.refseq2simseq.map.txt Generating reference-based v...1265 days ago
Create random 1000 INDEL in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuSNP.simseq.genome.fa -in...un Jan 10 16:14:00 2021] Introducing random INDELs based on the following parameters:...INDEL.refseq2simseq.map.txt Generating reference-based v...1265 days ago
Create random 1000 CNVs in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuINDEL.simseq.genome.fa -cnv_count 100 -prefix simuC...uced during simulation: simuCNV.refseq2simseq.map.txt Generating reference-based v...1265 days ago
Create random 5 inversions in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuCNV.simseq.genome.fa -in...an 10 16:30:40 2021] Introducing random Inversions based on the following parameters:...muINV.refseq2simseq.map.txt Generating reference-based v...1265 days ago
Create random 2 translocations in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuINV.simseq.genome.fa -tr...0 17:12:58 2021] Introducing random Translocations based on the following parameters:...TRANS.refseq2simseq.map.txt Generating reference-based v...1265 days ago
- (JitMetaENV) ➜ test_phase_assebly conda install -c bioconda bwise Collecting package metadata (current_repodata.json): done Solving environment: done ## Package P...
1044 days ago
