Results for "index"
Bio-Scripts
Installing Platypus on Ubuntu !
...ernal.o cram/cram_external.c gcc -g -Wall -O2 -I. -c -o cram/cram_index.o cram/cram_index.c gcc -g -Wall -O2 -I. -c -...-Ipysam -I/home/urbe/anaconda3/envs/py27/include/python2.7 -c tabix/index.c.pysam.c -o build/temp.linux...2062 days ago
CollectGcBiasMetrics.jar will generate a GC bias plot for each contig
samtools index aln-pe.mapped.sorted.bam for i in $(samtools view -H aln-pe.mapped.sorted.bam | awk -F"\t" '/@SQ/{gsub("^SN:","",$2);print $2}' ); do samtools view -b al...2047 days ago
- bwa aln -t 8 targetGenome.fa reads.fastq | bwa samse targetGenome.fa - reads.fastq\ | samtools view -bt targetGenome.fa - | samtools sort - reads.bwa.targetGenome samtools index reads.bwa.targetGenome.bam
1877 days ago
- Map them agaist reference avaga genome using following codes git clone https://github.com/lh3/bwa.git cd bwa; make bwa index ref.fa bwa mem -x pacbio ref.fa pacbio.fq > aln.sam bwa mem -x ont2d ref.fa ont-2D.fq > aln.sam
1768 days ago
Samtools commands for bioinformatician !
...42 -c sal_sej.bam ### sorting bam file by genome position samtools sort sal_sej.bam > sal_sej_sorted.bam ### indexing sorted file # ouput is file.bai # always index sorted files samtools index...1646 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP-Pro-3335-MT:~/Downloads/autoConTAMPR/bin$ sudo apt install libpar-packer-perl Reading package lists......1554 days ago
- ...: x86_64 CPUs: 2 Total Memory: 3.594GiB Name: jit-HP-Pro-3335-MTL Docker Root Dir: /var/lib/docker Debug Mode: false Registry: https://index.docker.io/v1/ Labels: Exp...
1552 days ago
Install htop in elementary/Ubuntu OS !
...+elementary2~ubuntu5.0.1) ... Processing triggers for bamfdaemon (0.5.3+18.04.20180207.2-0ubuntu1) ... Rebuilding /usr/share/applications/bamf-2.index... Processing triggers for m...1195 days ago
- ...base-dev (3.4.4-1ubuntu1) ... Processing triggers for bamfdaemon (0.5.3+18.04.20180207.2-0ubuntu1) ... Rebuilding /usr/share/applications/bamf-2.index... Processing triggers for l...
1097 days ago
- #Installing MySQL on Ubuntu #To install MySQL on your Ubuntu server follow the steps below: First, update the apt package index by typing: sudo apt update #Then install the...
962 days ago
