Download minikraken database !
...eads #kraken2 --use-names --threads 4 --db minikraken2_v2_8GB_201904_UPDATE --fastq-input --report evol1 --gzip-compressed --paired ../mappings/evol1.sorted.unmapped.R1.fastq.gz ../mappings/ev...1270 days ago
Create random 10000 SNPs in genome !
...05:57 2021] Generating output files .. Generating the correspondance map for genomic variants introduced during simulation: simuSNP.refseq2simseq.map.txt Generating reference-b...1267 days ago
Create random 1000 INDEL in genome !
...14:00 2021] Generating output files .. Generating the correspondance map for genomic variants introduced during simulation: simuINDEL.refseq2simseq.map.txt Generating reference-b...1267 days ago
Create random 1000 CNVs in genome !
...24:20 2021] Generating output files .. Generating the correspondance map for genomic variants introduced during simulation: simuCNV.refseq2simseq.map.txt Generating reference-b...1267 days ago
Create random 5 inversions in genome !
...30:40 2021] Generating output files .. Generating the correspondance map for genomic variants introduced during simulation: simuINV.refseq2simseq.map.txt Generating reference-b...1267 days ago
Create random 2 translocations in genome !
...12:58 2021] Generating output files .. Generating the correspondance map for genomic variants introduced during simulation: simuTRANS.refseq2simseq.map.txt Generating reference-b...1267 days ago
Set up WGD environment using conda !
#Wgd cannot be installed directly with bioconda at present, so it is slightly troublesome to install, because it #depends on a lot of software. wgd depends on the fol...1259 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...ed_result [-Wunused-result] system(command.append(outputPath).c_str());...ed_result [-Wunused-result] system(command.append(outputPath).c_str());.../envs/wgd/./testset/datasetI/arath_2_3_beta/cloudAP.txt -- Installing: /home/urb...1259 days ago
Converting from Windows-style to UNIX-style line endings with dos2unix
Lenovo-ideapad-320-15ISK:~/Downloads/abc/bin$ sudo apt install dos2unix [sudo] password for bioqueen: Reading pack...2-vte-2.91 libido3-0.1-0 libllvm6.0 libwayland-egl1-mesa Use 'sudo apt autoremove' to remove them....1233 days ago
Install ATOM editor on Elemantory OS / Ubuntu
...se) bioqueen@bioqueen-Lenovo-ideapad-320-15ISK:~/Downloads/$ sudo apt install ./atom-amd64.deb [...libwayland-egl1-mesa Use 'sudo apt autoremove' to remove them....tu1) ... Rebuilding /usr/share/applications/bamf-2.index... Pr...update, upgrade, view. Run `apm help ` to see the more detai...1232 days ago