Results for "PA"
Bio-Scripts
(JitMetaENV) ➜ day3 conda install -c bioconda maxbin2 Collecting package metadata (current_repodata.json...current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json)...1269 days ago
Create random 10000 SNPs in genome !
...unt = 10000 The option titv_ratio has been specified: titv_ratio = 0.5 [Sun Jan 10 16:05:57 2021] Introducing random SNPs based on the following parameters: > snp_count = 10000...1266 days ago
Create random 1000 INDEL in genome !
...rlaw_constant has been specified: indel_size_powerlaw_constant = 0.5 [Sun Jan 10 16:14:00 2021] Introducing random INDELs based on the following parameters: > indel_count = 100...1266 days ago
Create random 1000 CNVs in genome !
...ze = 100 The option cnv_min_size has been specified: cnv_max_size = 10000 [Sun Jan 10 16:24:20 2021] Introducing random CNVs with the following parameters: > cnv_count = 100...1266 days ago
Create random 5 inversions in genome !
...version_max_size has been specified: inversion_max_size = 100000 [Sun Jan 10 16:30:40 2021] Introducing random Inversions based on the following parameters: > inversion_count =...1266 days ago
Create random 2 translocations in genome !
...nslocation_count has been specified: translocation_count = 2 [Sun Jan 10 17:12:58 2021] Introducing random Translocations based on the following parameters: > translocation_cou...1266 days ago
- ...rbe/.local/lib/python3.6/site-packages (from bokeh==1.4.0->wgd...176 kB 63.7 MB/s Collecting pandas==0.24.1 Downloading pa...rbe/.local/lib/python3.6/site-packages (from matplotlib>=3.0.2...PyYAML, python-utils, pandas, packaging, Jinja2, humanfriendly...
1262 days ago
- ...all -c bioconda gffread Collecting package metadata (current_repoda...ne Solving environment: done ## Package Plan ## environment...8.9 MB The following NEW packages will be INSTALLED:...######################## | 100% Preparing transaction: done Verify...
1258 days ago
Set up WGD environment using conda !
...3/envs/wgd/lib/python3.7/site-packages (from wgd==1.2) (1.19.5...1.1 MB 68.0 MB/s Collecting packaging>=16.8 Using cached...Building wheels for collected packages: wgd, bokeh, ete3, PyYA...wf1 Standard workflow whole paranome Ks. wf2 Standard wo...1258 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...the project does not need compatibility with older versions....__bos (__s), __fmt, __va_arg_pack ());...__bos (__s), __fmt, __va_arg_pack ());...tI/arath_2_3_beta/multiplicon_pairs.txt -- Installing: /home/...1258 days ago
