Results for "No"
Bio-Scripts
Create random 10000 SNPs in genome !
...Check specified options .. Running simuG for SNP/INDEL simulation >> Ignore all options for CNV/inversi...1] Generating output files .. Generating the correspondance map for genomic variants introduced during...1268 days ago
Create random 1000 INDEL in genome !
...ter) ✗ perl ../simuG.pl -refseq simuSNP.simseq.genome.fa -indel_count 1000 -prefi..... Running simuG for SNP/INDEL simulation >> Ignore all options for CNV/inversi...es .. Generating the correspondance map for genomic variants introduced during...1268 days ago
Create random 1000 CNVs in genome !
...r) ✗ perl ../simuG.pl -refseq simuINDEL.simseq.genome.fa -cnv_count 100 -prefix s...ons .. Running simuG for CNV simulation >> Ignore all options for inversion/t...es .. Generating the correspondance map for genomic variants introduced during...1268 days ago
Create random 5 inversions in genome !
...ter) ✗ perl ../simuG.pl -refseq simuCNV.simseq.genome.fa -inversion_count 5 -pref...Running simuG for inversion simulation >> Ignore all options for translocati...es .. Generating the correspondance map for genomic variants introduced during...1268 days ago
Create random 2 translocations in genome !
...ter) ✗ perl ../simuG.pl -refseq simuINV.simseq.genome.fa -translocation_count 2 -...es .. Generating the correspondance map for genomic variants introduced during...txt Generating reference-based vcf file for genomic variants introduced during...1268 days ago
- ...Processing /home/urbe/sahil_data/novoKorea/comparativeGenomics/wgd Requirement already...Downloading joblib-0.11-py2.py3-none-any.whl (176 kB) |███...Downloading click-7.1.2-py2.py3-none-any.whl (82 kB) |████...nloading threadpoolctl-2.1.0-py3-none-any.whl (12 kB) Building w...
1265 days ago
- ...an.fasta gene_structures_post_PASA_updates.19157.gff3 #There are also another good option python gff2fa.py -t CDS ../../GCF_0355.2_L0_genomic.gff ../../GCF_001039355.2_...
1260 days ago
Set up WGD environment using conda !
#Wgd cannot be installed directly with bi...ing cached joblib-0.11-py2.py3-none-any.whl (176 kB) Collectin...ing cached click-7.1.2-py2.py3-none-any.whl (82 kB) Collecting...g cached plumbum-1.6.9-py2.py3-none-any.whl (115 kB) Collectin...: filename=sklearn-0.0-py2.py3-none-any.whl size=1316 sha256=4e...1260 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...tell CMake that the project does not need compatibility with olde...ng for pthread_create in pthreads - not found -- Looking for pthrea.../alignment/CMakeFiles/alignment.dir/Node.cpp.o [ 16%] Linking CXX s...6_64-linux-gnu/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’...1260 days ago
Steps to install Conda on Linux !
.../www.anaconda.com/products/individual ) $ chmod 777 Anaconda3-2020.11-Linux-x86_64.sh $ ./Anaconda3-2020.11-Linux-x86_64.sh #Follow the yes/no flags and finish till the end...1239 days ago
