Results for "UP"
Bio-Scripts
...hould be stored. We will also make a symlink so the executable downloaded is available directly from our bin folder. To run GATK we must first start up the virtual environment with...868 days ago
- (base) [me@hn1 ME]$ conda update conda Collecting package metada...ion: /home/me/anaconda3 added / updated specs: - conda..._0 The following packages will be UPDATED: coreutils...5 The following packages will be SUPERSEDED by a higher-priority c...
842 days ago
Bash online to update Linux OS
sudo bash -c 'for i in update {,full-,dist-}upgrade auto{remove,clean}; do apt-get $i -y; done'748 days ago
- ...lly installed and is no longer required: libfwupdplugin1 Use 'sudo apt autore...extgen-simulation-tools libgsl23 libgslcblas0 0 upgraded, 3 newly installed, 0 t...-simulation-tools (20160605+dfsg-4) ... Setting up libgslcblas0:amd64 (2.5+dfsg-...
721 days ago
Conda command to install checkV
...on: /home/man/anaconda3/envs/jitENV added / updated specs: - checkv...ipp-0.6.0-py_0 The following packages will be UPDATED: libgcc-ng...12-h166bdaf_2 The following packages will be SUPERSEDED by a higher-priority c...692 days ago
Script to rapid genome clustering based on pairwise ANI
...equences: blastn -query -db -outfmt '6 std qlen slen' -max_target_seqs 10000 -o -num_threads 32 Note: using the -perc_identity flag will speed up the search at the cost of sen...692 days ago
Raku script to find palindrome in genomes !
sub is-palindrome(Str $str) returns Bool { $str.=uc; # convert to uppercase $str.=subst:g/\s+//; # remove any spaces return $str eq $str.flip; } sub find-palindro...482 days ago
R script to covert and export html page to png
# Library library(streamgraph) # Create data: data475 days ago
- (base) [lege@hn1 testVisanu]$ conda create -n pythonENV python=3.10 scipy=1.13.0 astroid babel Channels: - conda-forge - bioconda - defaults Platform: linux-64 Collecting package metadata (repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
49 days ago
Perl script for chi-squared test !
.../usr/bin/perl # # chidi.pl # # A script to perform a chi-squared test of the dinucleotide frequencies of two FASTA files # Last updated by: $Author$ # Last updated on: $Date$ use strict...468 days ago
