Results for "IT"
Bio-Scripts
(JitMetaENV) ➜ day3 conda install -c bioconda maxbin2 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying wit...1278 days ago
Create random 10000 SNPs in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq SGDref.R64-2-1.dups.fa -snp_cou...option snp_count has been specified: snp_count = 10000 The option titv_ratio has been specified: titv_ratio = 0.5 [Sun Jan 10 1...1275 days ago
Create random 1000 INDEL in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuSNP.simseq.genome.fa -indel_count 1000 -prefix simuINDEL [Sun Jan 10 16:14:00 2021] Starting simuG .. [Sun...1275 days ago
Create random 1000 CNVs in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuINDEL.simseq.genome.fa -cnv_count 1...nv_max_size = 10000 [Sun Jan 10 16:24:20 2021] Introducing random CNVs with the following parameters: >...1275 days ago
Create random 5 inversions in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuCNV.simseq.genome.fa -inversion_count 5 -prefix simuINV [Sun Jan 10 16:30:40 2021] Starting simuG .. [Sun...1275 days ago
Create random 2 translocations in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuINV.simseq.genome.fa -translocation_count 2 -prefix simuTRANS [Sun Jan 10 17:12:58 2021] Starting simuG .....1275 days ago
- ...me/urbe/.local/lib/python3.6/site-packages (from wgd==1.2) (3....nvs/JitMetaENV/lib/python3.6/site-packages (from bokeh==1.4.0-...me/urbe/.local/lib/python3.6/site-packages (from matplotlib>=3...lctl, MarkupSafe, joblib, scikit-learn, PyYAML, python-utils,...
1271 days ago
- #GffRead: GFF/GTF utility providing format conversions, f...e extraction and more. https://github.com/gpertea/gffread (jitENV) jitendra@Bathymodiolus:~$...environment location: /home/jitendra/.conda/envs/jitENV...tion: done #Run as follows (jitENV) jitendra@Bathymodiolus:~$...
1267 days ago
Set up WGD environment using conda !
...cannot be installed directly with bioconda at present, so it is slightly troublesome to install, because it #depends on a lot of software...r.gz (1.1 kB) Collecting scikit-learn Downloading scikit_l...joblib, cycler, tornado, scikit-learn, PyYAML, python-utils,...1267 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...e -- Build files have been written to: /home/urbe/Tools/i-adh...akeFiles/i-visualize.dir/SvgWriter.cpp.o [ 32%] Building CXX...from /usr/include/c++/7/bits/basic_string.h:6361,...tasetII/vvi_lists_030210_201/mitochondrion.lst -- Installing:...1267 days ago
