Results for "c"
Bio-Scripts
(JitMetaENV) ➜ day3 conda install -c bioconda krona Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists. 2020.12.5-py36h5fab9bb_1 Proceed ([y]/n)?1273 days ago
- (JitMetaENV) ➜ day3 conda install -c bioconda maxbin2 Collecting package metadata (current_repodata.json...ving environment: failed with repodata from current_repodata.json, will ret...: done ==> WARNING: A newer version of conda exists....
1273 days ago
Create random 10000 SNPs in genome !
...-refseq SGDref.R64-2-1.dups.fa -snp_count 10000 -prefix simuSNP...uG .. [Sun Jan 10 16:05:57 2021] Check specified options .. Run...imulation >> Ignore all options for CNV/inversion/translocation sim...on the following parameters: > snp_count = 10000 > titv_ratio = 0...1270 days ago
Create random 1000 INDEL in genome !
...[Sun Jan 10 16:14:00 2021] Check specified options .. Run...on >> Ignore all options for CNV/inversion/translocation sim...he option indel_size_powerlaw_constant has been specified: in...imuINDEL.refseq2simseq.INDEL.vcf [Sun Jan 10 16:14:00 2021...1270 days ago
Create random 1000 CNVs in genome !
...-refseq simuINDEL.simseq.genome.fa -cnv_count 100 -prefix simuCNV [S...G .. [Sun Jan 10 16:24:20 2021] Check specified options .. Run...andom seed: 678641233 The option cnv_count has been specified: c...[Sun Jan 10 16:24:20 2021] Introducing random CNVs with the follo...1270 days ago
Create random 5 inversions in genome !
...) ✗ perl ../simuG.pl -refseq simuCNV.simseq.genome.fa -inversion_count 5 -prefix simuINV [Sun.... [Sun Jan 10 16:30:40 2021] Check specified options .. Run...39103429 The option inversion_count has been specified: inver...an 10 16:30:40 2021] Simulation completed! :) [Sun Jan 10 16...1270 days ago
Create random 2 translocations in genome !
...eq simuINV.simseq.genome.fa -translocation_count 2 -prefix simuTRANS [S...G .. [Sun Jan 10 17:12:58 2021] Check specified options .. Run...t has been specified: translocation_count = 2 [Sun Jan 10 17:12:....txt Generating reference-based vcf file for genomic variants in...1270 days ago
- ...ter) pip install --user . Processing /home/urbe/sahil_data/novoKorea/comparativeGenomics/wgd Requir...ateutil>=2.1 in /home/urbe/.local/lib/python3.6/site-packages...py2.py3-none-any.whl (12 kB) Collecting PyYAML>=3.10 Down...this warning, use --no-warn-script-location. Attempting u...
1266 days ago
- .../GTF utility providing format conversions, filtering, FASTA sequence extraction and more. https:...ing environment: done ## Package Plan ## environment...h8b12597_0 635 KB bioconda libgcc-ng-9.1.0...pkgs/main/linux-64::libstdcxx-ng-9.1.0-hdf63c60_0 zlib...
1262 days ago
Set up WGD environment using conda !
#Wgd cannot be installed directly with bioconda at present, so it is slig...py2.py3-none-any.whl (86 kB) Collecting Jinja2>=2.7 Using...ng scipy>=1.2 Downloading scipy-1.6.0-cp37-cp37m-manylinux...thon-utils-2.5.1 pytz-2020.5 scikit-learn-0.24.0 scipy-1.6.0...1262 days ago
