Comment on "List of non-commercial NGS genotype-calling software"
...[ paper-2014 ] manta – Structural variant and indel caller for mapped sequencing dat...-2015 ]gridss – GRIDSS: the Genomic Rearrangement IDentification Software Suite. [ pa...1193 days ago
1197 days ago
Comment on "Letter of motivation for bioinformatics applicants !"
...ious scholastic and professional experience. You can also include teaching and research experience, work outside an academic field, and even voluntee...Research position you are related to. Your applications are not just sorted out...1271 days ago
Comment on "List of genome announcement, notes and reporting journals"
Computational and Structural Biotechnology Journal for bioinformatics tool publication1277 days ago
Comment on "List of Bioinformatics Vacancy, Jobs, Opportunity websites"
Bioinformatics jobs at https://www.invitae.com/en/careers/search1279 days ago
Comment on "URMAP, an ultra-fast read mapper"
...d FASTQ format. It is generally faster to use uncompressed reads because decompression is typically more expensive than the ad...-" (minus sign) as the filename. Using /dev/stdout will not work because urmap attempts to create t...1334 days ago
Comment on "Sibelia: A comparative genomics tool"
...ta" with the "loose" simplification parameters. There are two another simplification parameters sets, called...ry short period of time, they can be quite big -- ~20*N bytes...here the block instance is located. Other fields are describe...| 1500 | As you can see, "loose" set is more agg...1336 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...;and gnuplot/4.6.5) – we can plot the kmer content of the...ingle file, for gzipped files, this can be done with zcat, or f...1.fastq >> combined.fastq $ zcat reads_R2.fastq.gz >> c...d look like in the kmer plot? What can the kmer graph tell you abou...1388 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...program will also break up contigs/scaffolds at spurious sites to fo...u if everything’s ok! in this case, no output is good output,...rence. Reapr is finicky though, and can’t use libraries with d...utes. There are several checks you can do after running Reapr (deta...1388 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Biology Direct journals accept short notes/ application notes https://biologydirect.biomedcentral.com/submission-guidelines/aims-and-scope1393 days ago