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Bio-Scripts

• • Shruti Paniwala@shruti

  

  Install kraken on linux

  ...done Solving environment: done ## Package Plan ## environment location: /home/anaconda3 added /...done Solving environment: done ## Package Plan ## environment location: /home/anaconda3 added /...

  1516 days ago

• • Jit@jit.aber

  

  Install quast using conda !

  (JitMetaENV) ➜ ~ conda install -c bioconda quast Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version...

  1269 days ago

• • Jit@jit.aber

  

  Install SibeliaZ in your Linux cluster !

  ...y with next repodata source. Collecting package metadata (repodata.json): done Solving environment: done ## Package Plan ## environment location: /home/jitendra/.conda/envs/j...

  1286 days ago

• • Jit@jit.aber

  

  Install fastqc using conda !

  (JitMetaENV) ➜ JitMeta conda install -c bioconda fastqc Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1270 days ago

• • Jit@jit.aber

  

  Install trimmomatic using conda !

  (JitMetaENV) ➜ fastQC_out conda install -c bioconda trimmomatic Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1270 days ago

• • Jit@jit.aber

  

  Install spades using conda !

  (JitMetaENV) ➜ fastQC_out conda install -c bioconda spades Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1270 days ago

• • Jit@jit.aber

  

  Install assembly-stats with conda !

  (JitMetaENV) ➜ META_PE conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1270 days ago

• • Jit@jit.aber

  

  Install Kraken2 using conda !

  (JitMetaENV) ➜ day2 conda install -c bioconda kraken2 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve....

  1269 days ago

• • Jit@jit.aber

  

  Install prokka using conda !

  (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen sol...

  1269 days ago

• • Jit@jit.aber

  

  Install seqtk using conda !

  (JitMetaENV) ➜ META_PE conda install -c bioconda seqtk Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1269 days ago

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