Results for "55"
Bio-Scripts
...an.fasta gene_structures_post_PASA_updates.19157.gff3 #There are also another good option python gff2fa.py -t CDS ../../GCF_0355.2_L0_genomic.gff ../../GCF_001039355.2_L0_genomic.fna > La.cds.fa...1231 days ago
Set up WGD environment using conda !
...3.1-cp37-cp37m-linux_x86_64.whl size=44620 sha256=89175438317c730e5db0088255ca2f5a9745368487ed0fd0c7dbf644...learn: filename=sklearn-0.0-py2.py3-none-any.whl size=1316 sha256=4e2eed235501a23fa4cb58a4faef00b3c824d88a...1231 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...ve argument in the range [0, 268435455] /home/urbe/Tools/i-adhore-3...ve argument in the range [0, 268435455] /home/urbe/Tools/i-adhore-3...etII/ptr_lists_030210_201/scaffold_255.lst -- Installing: /home/urb...etII/ptr_lists_030210_201/scaffold_655.lst -- Installing: /home/urb...1231 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda shasta Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1082 days ago
- ...Get:55 http://in.archive.ubuntu.com/...nic/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1,552 B]...ge libglib2.0-dev-bin. Preparing to unpack .../055-libglib2.0-dev-bin_2.56.4-0ub...
1082 days ago
- ...:icu-68.1-h58526e2_0 --> pkgs/main::icu-58.2-he6710b0_3 libxml2 conda-forge::libxml2-2.9.12-h72842e0_0 --> pkgs/main::libxml2-2.9.10-hb55368b_3 Proceed ([y]/n)? y...
1074 days ago
Get the Linux system information !
#!/bin/bash # while-menu-dialog: a menu driven system information program DIALOG_CANCEL=1 DIALOG_ESC=255 HEIGHT=0 WIDTH=0 display_result() { dialog --title "$1" \...976 days ago
- ...ads.sh build=1 \ ref=GCA_003401745.1_ASM340174v1_genomic.fna_upper.diploid.fasta.gz \ illuminanames=t addslash=t \ coverage=30 paired=t maxinsert=550 mininsert=450 \ out1=illumi...
956 days ago
Bash script to simulate a genome !
...ads.sh build=1 \ ref=GCA_003401745.1_ASM340174v1_genomic.fna_upper.diploid.fasta.gz \ illuminanames=t addslash=t \ coverage=30 paired=t maxinsert=550 mininsert=450 \ out1=illumi...945 days ago
Extract the values using ids !
...at file1 11002 10995 48981 79600 $ cat file2 10993 item 0 11002 item 6 10995 item 7 79600 item 7 439481 item 5 272557 item 7 224325 item...922 days ago
