2953 days ago
List of gene ontology software and tools
...ce) is a data-mining tool that can be used to identify significant co-clustering of genes with similar functio...alysis to determine if any statistically significant gene ontology co-clustering has occurred. http://pathcur...3737 days ago
List of comparative genomics resources !
...ve online poster presentation on the Macaque genome, including high-quality images, video clips, and Web resources The TIGR Gene Indices -- clustering and assembling EST and known...705 days ago
Bioinformatics Algorithm Demonstrations and Tutorials
...trated include two approaches to approximate string matching (dynamic programming and Shift-AND numeric approximate matching), Hierarchical Clustering (used in phylogenetic studies...3732 days ago
7th International Conference on Bioinformatics and Computational Biology (BICoB)
...ding, alternative splicing, EST analysis and comparative genomics. Sequence analysis: Multiple sequence alignment, sequence search and clustering, function prediction, motif d...3526 days ago
Bio++ : C Language libraries for your biological need
...he bacterial phylogeny problem. Syst Biol. 2007 Aug;56(4):633-42.Dutheil J, Galtier N. Detecting groups of coevolving positions in a molecule: a clustering approach. BMC Evol Biol. 2007...3975 days ago
Genome Assembly Tools and Software - PART2 !!
...reads to a reference genome, correcting sequencing errors by locally clustering reads in small windows of the...rsion of RePS incorporates some of the ideas introduced by Phusion on clustering treecat – Phylogenetic...2713 days ago
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R package for visualising GO enrichment
...hem together with figures of experimental data. This allows us to draw informative summary plots for analyses such as differential expression or clustering, where for each gene list we...3968 days ago
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Postodoc in Computational/Systems Biology and Machine Learning
...re: 1. In-depth understanding and implementation of methods and development of algorithms for statistical and machine learning classification, clustering, predictive modelling. 2. E...3706 days ago
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Set up WGD environment using conda !
...ssage and exit. Commands: dmd All-vs.-all diamond blastp + MCL clustering. kde Fit a KDE to a Ks di...ksd Ks distribution construction. mcl All-vs.-all blastp + MCL clustering. mix Mixture modeling of...1231 days ago
Comment on "List of gene ontology software and tools"
GeneSCF serves as command line tool for clustering list of genes based on functional annotation (Geneontology, KEGG, REACTOME and NCG). This tool requires gene list in the form of Entrez Gene IDs or Official gene symbols as a input. http://genescf.kandurilab.org/1520 days ago
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