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Tools to detect synteny blocks regions among multiple genomes
...formulas, a suitable image of syntenic relationships or physical mapping can be obtained. http://www.automatizacionysistemas.com/Poster_MapSynteny.pdf One of the best synteny tuto...2653 days ago
List of gene ontology software and tools
The Gene Ontology (GO) is a set of associations from biological phrases to specific genes that are either chosen by trained curators or generated automatically. GO is...3752 days ago
Next Generation Sequencing (NGS) Tutorials
....co.uk/blog/2009/08/basics-sequencing-dna-part-2/ A window into third-generation sequencing http://hmg.oxfordjournals.org/content/19/R2/R227.full.pdf ============================...3530 days ago
Latest paper on comparison of mapping tools
...ttp://bmi.osu.edu/hpc/software/benchmark/ http://bmi.osu.edu/hpc/software/pmap/pmap.html Other similiar papers: http://online.liebertpub.com/doi/pdf/10.1089/cmb.2012.0022 http:/...3939 days ago
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BioRuby :Ruby packages for biologist
...by related Projects: Project treehttp://rubyforge.org/softwaremap/trove_list.php?form_cat=252 Referencehttp://www.jsbi.org/journal/GIW03/GIW03P191.pdf3990 days ago
Virtual Bioinformatics Online Tutorial
...rithms for Molecular Biology - Bioinformatics course notes, Tel Aviv University (TAU, Israel) Certificate Program in Bioinformatics - Standford Courses Offered by BU Bio...3964 days ago
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The human microbiome and what we do to it
...ally human — and we need our non-human bits to survive. This part of us now has a name — it's called our microbiome. But we're doing dreadful things to this hidden major...3898 days ago
2914 days ago
picard tools command to get some insert statistics
...lace #module load picard/2.0.1 java -Xmx16g -XX:PermSize=8g -jar $PICARD_HOME/picard.jar CollectInsertSizeMetrics MINIMUM_PCT=0 HISTOGRAM_FILE=.pdf INPUT= OUTPUT=.sorted.colle...1380 days ago
3748 days ago
Comment on "CovCal: Coverage / Read Count Calculator"
Sequencing coverage is defined as the average number of reads that covers each base of the reference genome. Estimating the sequencing coverage is very...626 days ago
Comment on "Phylogenetic for Bioinformatics"
Nice evolutionary distance caculation methods @ https://www.cs.rice.edu/~nakhleh/COMP571/Slides/Phylogenetics-DistanceMethods-Full.pdf633 days ago