Comment on "Tools to detect synteny blocks regions among multiple genomes"
halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments https://pubmed.ncbi.nlm.nih.gov/32463100/1287 days ago
Comment on "Ten International Scholarships for Indian Biotechnology and Bioinformatics Students"
Funding opportunities for PhD and postdocs in India https://indiabioscience.org/media/articles/GRANTS-BOOK-FINALVer_09111.pdf1296 days ago
Comment on "Ten International Scholarships for Indian Biotechnology and Bioinformatics Students"
Useful books for Indian scholarships https://indiabioscience.org/media/articles/GRANTS-BOOK-FINALVer_09111.pdf1296 days ago
Comment on "URMAP, an ultra-fast read mapper"
...output to another program. The -threads option specifies the number of processor threads to use for mapping. Default is the number of CPU cores or 10, whichever is smaller. The...1326 days ago
Comment on "Sibelia: A comparative genomics tool"
...small synteny blocks (shorter than 15 000 BP), while "fine" option...belia" produces following files: 1. Blocks coordinates 2. Genom...wo lines for each input sequence: 1. Header line -- FASTA header...nly in big synteny blocks, like > 100 000 BP, set this parameter...1328 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
... mugsy --directory /data/output --prefix mygenomes genome1.fasta genome2.fasta genome3.f...t filename will be used as the genome name in the output files (eg. genome1 from genome1.fsa). Header lin...1328 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...KAT again (You will need the modules: KAT/2.1.1 and gnuplot/4.6.5)...unzipped files cat. Ex. $ cat reads_R1.fastq >> combined.fastq...for canonical hashes for both sequence 1 and 2, as well as 8 thre...1380 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
Reapr is a tool trying to find explicit errors in the assembly based on incongruently mapped reads. It is heavily based on too low span coverage, or reads mappi...1380 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
NAR Web server accept tools https://academic.oup.com/nar/issue/43/W11385 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Methods in Molecular Biology https://www.springer.com/series/7651 Accept bioinformatics tools, such as ART etc1400 days ago