Results for "chromosomes"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...ation of blocks of order within two sets of chromosomes that are being compared with...The genomes may be represented by sequenced chromosomes (pseudomolecules), by draft s...a 'SyntenyView' page displays a diagram of chromosomes with blocks of conserved synt...2790 days ago
Dynamic chromosome breakpoints !!!
...vision and segregation of identical sets of chromosomes into daughter nuclei and nucl...vement gets start and pulled DNA apart, the chromosomes are free to undergo recombina...ers are caused by the loss or gain of whole chromosomes, which affect the copy number...3732 days ago
- +8 more Blogs
Bookmarks
- LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful fo...
3119 days ago
- ...solutions starting from aligned reads up to in-depth analyses. Importantly, HiCdat is focussed on the analysis of larger structural features of chromosomes, their correlation to genomic...
3185 days ago
- +24 more Bookmarks
Files
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl4047 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...r for Brassicaceae SpeciesKGBassembler (Brassicaceae genome assembler) is a C++ based tool for assembling contigs and/or scaffolds to full chromosomes based on the karyotype maps o...2865 days ago
Top-level pages
Commercial and public next-gen-seq (NGS) software
...ion is specifically optimized for the analysis of large numbers (millions) of high-throughput next-generation sequencer reads, aligned to whole chromosomes of model organism or mammalia...3698 days ago
Software packages for next gen sequence analysis
...ion is specifically optimized for the analysis of large numbers (millions) of high-throughput next-generation sequencer reads, aligned to whole chromosomes of model organism or mammalia...3422 days ago
- +3 more Top-level pages
Wire posts
News
Chromatin: From nucleosomes to chromosomes, 30 April - 2 May 2014
EMBL-EBI announced the Wellcome Trust Scientific Conference Chromatin: From nucleosomes to chromosomes, which continues EMBL-EBI series of meetings focused on fundamental aspects of chr...4104 days ago
Breaking chromosomes to study cancer !!!
Chromosomes are present in every cell of our body and...rried in genes that are arranged along the chromosomes. There are usually 46 chromosomes in every cell. These chromoso...ranged in some way. This may happen if two chromosomes swap pieces (a reciprocal tra...3759 days ago
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Opportunity posts
Postdoc Positions - Mammalian Transcriptome Evolution at SIB
...genomes from primates (e.g., the emergence of new genes and their functions) and other mammals (e.g., the origin and evolution of mammalian sex chromosomes). In the framework of a recen...4098 days ago
ResearchLabs posts
- Complete, accurate replication of the genome is essential for life. All chromosomes in eukaryotic cells must be duplicated and then segregated to daughter cells to ensure genetic integr...
3688 days ago
- ...interested in the mechanisms of species origin from a molecular and ecological perspective. Particularly, we are interested in the role of sex chromosomes in speciation. Most of our re...
3182 days ago
- +3 more ResearchLabs posts
Video
How DNA is Packaged (Advanced)
...ch cell in our body. And a typical cell nucleus is so small that ten thousand could fit on the tip of a needle. It is important to realize that chromosomes are not always present, they...4056 days ago
Bio-Scripts
Plot the density of genes in R
#column1 = chromosome name and column2 = start position of the gene # check if ggplot2 is installed, if so, load it, # if not, install and load it if("ggplot2" %in%...2464 days ago
Plot custom gene density with R
library(karyoploteR) pp2429 days ago
- +3 more Bio-Scripts
Comments
Comment on "Biological databases !"
Chromosomes here https://hgdownload.cse.ucsc.edu/goldenpath/hg38/chromosomes/1723 days ago
Comment on "RACA: Reference-Assisted Chromosome Assembly"
Chromosomer – a reference-based genome arrangement tool, which rapidly builds chromosomes from genome contigs or scaffolds using their alignments to a reference genome of a closel...2951 days ago
- +2 more Comments
