BBTools for bioinformatician !
...by 2. The different columns tell you the count/percent of each event. Considering the cigar strings from alignment, "Match Rate" is the number of symbols indicating a reference match...2304 days ago
List of perl special symbols !
...They are the variables that use punctuation characters after the usual variable indicator ($, @, or %), such as $_ ( explained below ). Special Symbols – File handlers $@ P...1593 days ago
FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
...FOGSAA is a fast Global alignment algorithm. It is basically a branch and bound approach which starts branch expansion in a greedy way taking the symbols from the given pair of sequen...2374 days ago
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Regular Expression Cheat Sheet
...heat sheet, hence write our own cheat sheet. The Regular Expressions Cheat Sheet, a quick reference guide for regular expressions, including symbols, ranges, grouping, assertions...3986 days ago
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Apps for Busy Bioinformatics Researchers !!!
...etwork connection for local databases. View and search PubMed in table view. GeneIndex provides a convenient and portable way to lookup gene symbols while at a seminar, conferenc...3575 days ago
Perl script to find coding regions in DNA sequences
...nce. To split the sequence in segments of length # three, a regular expression will be used searching for all of the # possible groups of three symbols (option g) my @codons = ($...2189 days ago
Pack a perl program with their dependencies on Ubuntu !
...lho/2018/07/23/5-reasons-you-should-switch-from-windows-to-linux-right-... Jit@jit.aber List of perl special symbols !By Jit 48 days ago PerlSpecialSymbols Perl is know for symb...1545 days ago
Comment on "Sibelia: A comparative genomics tool"
...u can see, "loose" set is more aggressive -- at it's final stage it glues together 5000-mers that are separated from each other by at most 15000 symbols. Although this description i...1319 days ago
Comment on "List of gene ontology software and tools"
GeneSCF serves as command line tool for clustering list of genes based on functional annotation (Geneontology, KEGG, REACTOME and NCG). This tool requires gene list in the form of Entrez Gene IDs or Official gene symbols as a input. http://genescf.kandurilab.org/1526 days ago