Results for "Choose"
Blogs
How to install Perl modules on Mac OS X in easy steps !!
...r/bin/make or the value returned when you run which make from the command line) and your choice of CPAN mirrors (which you actually choose don’t really matter, bu...2778 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
...sumable flow cell can now generate 10–20 Gb of DNA sequence data. Ultra-long read lengths are possible (hundreds of kb) as you can choose your fragment length. On...2344 days ago
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Bookmarks
mrFAST: Micro Read Fast Alignment Search Tool
...l duplications. mrFAST maps short reads with respect to user defined error threshold, including indels up to 4+4 bp. This manual, describes how to choose the parameters and tune mrFAS...2955 days ago
- ...ize, heterozygosity rate, and repeat content from unprocessed short reads. These features are essential for studying genome evolution, and help to choose parameters for downstream ana...
2369 days ago
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Discussion topics
- I'm new to bioinformatics and recently started learning Perl. I found several rival distributions available for Windows platform, which confuse me at the begining. I g...
3939 days ago
Pages
Awesome perl frameworks, libraries and software - PART 3
...figuration files. mackers/passook - Passook is a perl script that automatically generates passwords. Passook is customizable so that you can choose different levels between a ve...2518 days ago
Top-level pages
Great Place to Study Bioinformatics in Europe
Study bioinformatics is like being jack of all trade so it is important you choose where it will be good backup of computer science, and natural science infrastructure and faculty. Es...3056 days ago
Most Commonly used Awk by Bioinformatician
...script. You can find a lot of online tutorials, but here I will only show a few examples which cover most of bioinformatician daily uses of awk. choose rows where column 3 is larger...3936 days ago
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News
You and your friend have similar DNA !!!
New research out of Massachusetts claims that people often choose friends that are similar to them in genetics and they are more accurate than you might suppose. A study published on...3593 days ago
- ...elow) to refine the set of genome assemblies of interest. Then, just open the “Download assemblies” menu, choose the source database (GenBank or RefSeq), choose the file type, and start the...
2571 days ago
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Bio-Scripts
BioPerl to convert between sequence formats from Fasta to Genbank
#!/usr/local/bin/perl -w # Sequence formats to choose: Fasta, EMBL. GenBank, Swissprot, PIR and GCG use Bio::SeqIO; $inFile = "BRCA2.fa"; $in = Bio::SeqIO->newFh('-file'...2939 days ago
Needleman-Wunsch Algorithm in Perl
#!/usr/bin/perl # USAGE: perl nw.pl HEAGAWGHEE PAWHEAE BLOSUM50.txt -8 # See: "Biological sequence anaysis" Durbin et al. ed. CUP 1998, Pg. 19 # Needleman-...2929 days ago
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Comments
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...enomic structure and gene content of two or more related species. Here are some general steps to follow for conducting a genome synteny analysis: Choose the species: Select the speci...447 days ago
Comment on "Basic command-line to run BLAST"
...eral steps for performing a BLAST search: Choose the BLAST program: BLAST has...blastp, blastn, blastx, tblastn, and tblastx. Choose the program that is appropria...GenBank, RefSeq, and non-redundant databases. Choose the database that is most app...447 days ago
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