Tools to detect synteny blocks regions among multiple genomes
...et. al. define it as ‘any conserved sequence blocks, regardless o...t to know that there are several conserved blocks in genome which remain...enes on the same chromosome) and conserved synteny (presence of two or m...hro is a tool designed to define conserved synteny blocks. It reconstruc...2628 days ago
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SATSUMA : Highly sensitive whole-genome synteny alignments.
...ome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the conserved order and orientation of feat...2932 days ago
List of In-silico Binding Site Prediction Tools
...proteins such as Kinases and the conserved structural features of their...For example, it can highlight a conserved activation loop common to pro...xes and recognition of spatially conserved physico-chemical properties i...ares it with a set of 215 highly conserved structural motifs known to bi...3762 days ago
Next generation sequencing in R or bioconductor environment
...etrieve the sequences around peaks, obtain enriched Gene Ontology (GO) terms, find the nearest gene, exon, miRNA or custom features such as most conserved elements and other transcript...3643 days ago
Conserved Domain Database (CDD) version 3.11 released
...Center for Biotechnology Information (NCBI) Conserved Domain Database (CDD) version...st recent Pfam release 27. Updates to the Conserved Domain Database include: P...s results list. You can access CDD at the Conserved Domains homepage and find upd...3746 days ago
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Bioinformatics -- Understanding of living systems through information science
...nd duplications, occur. The genome comparison system developed by the Sakakibara Lab calculates homologous sequences called anchors, which are conserved between species. If the genom...3935 days ago
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Pack a perl program with their dependencies on Ubuntu !
...developing field of comparative genomics. Comparison of the fruit fly genome with the human genome reveals that about sixty percent of genes are conserved (Adams et al. 2000). That is,...1529 days ago
Comment on "Short-read assembly using Spades !"
...such as QUAST or BUSCO. These tools assess the completeness and accuracy of the assembled genome by comparing it to reference genomes or sets of conserved genes. Iterative assembl...434 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...eny can be visualized using tools such as Circos or SynMap. Interpret the results: Interpret the results of the synteny analysis by identifying conserved genomic regions, identifying...441 days ago