Results for "Pre-Alignment"
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Usage Summary Produce help page. Quickly check the software usage and available command line options. $ ./fastANI -h One to One. Compute ANI between...1281 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
# envname is the name of your (existing) conda env conda activate envname # cpanm is available on either conda-forge or # bioconda, so add conda-forge (or look up # ho...1361 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
Check the perl module Test if dependencies are met by running this perl one-liner: perl -e "use JSON::XS;"1414 days ago
Comment on "Sibelia: A comparative genomics tool"
Basic usage =========== In this manual it is assumed that "Sibelia" is properly installed and the directory with "Sibelia.py" is in your "PATH" environment variable or...1465 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
Set up the environment bash source /path/to/install/mugsyenv.sh Run mugsy mugsy --directory /data/output --pr...1465 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
Using KAT again (You will need the modules: KAT/2.1.1 and gnuplot/4.6.5) – we can plot the kmer content of the assembly compared to the kmer content o...1517 days ago
- kallisto can process either single-end or paired-end reads. The default running mode is paired-end and requires an even number of FASTQ files represented as pairs, e....
1541 days ago
Comment on "Install snakemake and activate on conda"
conda clean --all1718 days ago
Comment on "Install Zef for Raku !"
# smoke test modules from all repositories zef smoke # run Build.pm if one exists in given path zef build . # update Repository package lists zef update # upgr...1731 days ago
Comment on "How to set up SSH on Ubuntu 18.04"
The SSH server is not installed by default on Ubuntu desktop systems but it can be easily installed from the standard Ubuntu repositories. To install and enable SSH on yo...1736 days ago
