Comment on "Does anyone have Nanopore latest updates?"
Virus reveals Nanopore mechanism: http://www.nanowerk.com/nanotechnology-news/newsid=36061.php http://www.nature.com/ncomms/2014/140616/ncomms5171/full/ncomms5171.html3658 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
...human reference genome? What is reference annotation, how to download it etc. Here are some resources that...ference annotation downloadhttp://useast.ensembl.org/info/data/ftp/index.html3673 days ago
Comment on "Commercial and public next-gen-seq (NGS) software"
There are several other softwares Eland: http://illumina.ucr.edu/illumin...): http://maq.sourceforge.net/maq-man.shtmlSOAP alignment tool: http://so...l: http://maq.sourceforge.net/bwa-man.shtmlBWA-SW (general purpose local...http://1001genomes.org/downloads/shore.html...3674 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
R package SPP for chip-seq analysis. It can read quite a few aligner's output file. Here is the original package tutorial. http://compbio.med.harvard.edu/Supplements/ChIP-seq/tutorial.html...3675 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
NGS related research paper on Bioinformatics Journal @ http://www.oxfordjournals.org/our_journals/bioinformatics/nextgenerationsequencing.html3676 days ago
Comment on "Does anyone have Nanopore latest updates?"
Another Nanopore sequencing based startup come into market: Quantapore Inc., Address: 1455 Adams Drive, Suite 10...s.com/sanfrancisco/blog/biotech/2014/05/quantapore-dna-sequencing-ilmn-pacb-tmo.html...3685 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
The FindMotif.pl program uses position-specific scoring matrices to search for sequences similar to a consensus sequence. Find more at http://www.people.vcu.edu/~elhaij/IntroBioinf/Notes/PSSM-Perl.html3689 days ago
Comment on "Most Commonly used Awk by Bioinformatician"
Some of the useful Unix onliner http://genomics-array.blogspot.in/2010/11/some-unixperl-oneliners-for.html3715 days ago
Comment on "R and Bioconductor Tutorial"
NGS with R ShortRead – Quality assesment of the reads, finding duplicates, trimming, string pattern searches [1] Biostrings – Reading sequences in R [2...3722 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
r2cat (related reference based contig arrangement tool) can be used to order a set of contigs with respect to a si...ynteny plot. Find more at http://bibiserv.techfak.uni-bielefeld.de/cg-cat/r2cat.html3727 days ago