Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
NAR: Genomics and Bioinformatics publishes high quality research into genomics and bioinformatics, including novel computational or experimental methods and novel biological findings related to genomics, proteomics, transcriptomics, and epigenetics. https://academic.oup.com/nargab1887 days ago
Comment on "Estimate Genome Size"
...counts_0.histo # generate a pdf graph of the histogram jellyplot.pl fastq.counts_0.histo # look at fastq.counts_0.histo.pdf and identify the approximate peak # use find_valleys...1926 days ago
Comment on "Extract fasta sequence from a multifasta file with fasta header Ids"
perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file If you have a large number of sequences that you want to extract, then you most likely have the seque...1938 days ago
Comment on "Want to Know which genome assembler rule the world ?"
Canu Assembler is my personal favourate.Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequelor Oxford Nanopore MinION).1978 days ago
Comment on "Perl one-liner for bioinformatician !!!"
This tutorial is useful https://blogs.oracle.com/linux/the-top-10-tricks-of-perl-one-liners-v21984 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Align Synteny - Beginning from completed or draft genomes, find shared syntenic regions and align them quickly while accounting for inversions, rearrangements, and duplications. http://www2.decipher.codes/AlignSynteny.html2002 days ago
Comment on "List of motif discovery tools !"
Motif algorithms This link on Nature explain: how does DNA sequence motif discovery work? Paper on BMC bioinformatics: survey of DNA motif finding algorithms This paper discusses some limitations and potentials of motif discovery algorithms (2005)2010 days ago
Comment on "Long read assembly workshop !"
Long reads base bacterial genome assembly https://inf-biox121.readthedocs.io/en/2016/Assembly/practicals/07_Assembly_using_minasm+racon.html2067 days ago
Comment on "nanofilt: Filtering and trimming of long read sequencing data"
Nanofilt steps https://gigabaseorgigabyte.wordpress.com/2017/06/05/trimming-and-filtering-oxford-nanopore-sequencing-reads/2068 days ago
Comment on "List of Bioinformatics Vacancy, Jobs, Opportunity websites"
...mp;srcqs=%5EGt26CC5P4q%2FjNyn7ihR74LQubT1BthhYtL5I6uKdba6tR8uiTotVecSxrij7E5AbC5qzhZCQb4yXNzDonaHV00Ix51VPy0Z5JfP88IO51l...PXFqWdxNit0hvxthQzWVuMHZXwxTHFR%2FPr47VA7Ra0oPN4ypOkwYhs3y5zH57EjP6RkxSuGH6DrgMYhqIXdOgQ0Fd6782B6IiC...2084 days ago