Results for "Algorithm Designing"
Bio-Scripts
Needleman-Wunsch Algorithm in Perl
#!/usr/bin/perl # USAGE: perl nw.pl HEAGAWGHEE PAWHEAE BLOSUM50.txt -8 # See: "Biological sequence anaysis" Durbin et al. ed. CUP 1998, Pg. 19 # Needleman-W...2905 days ago
Genetic Algorithms demonstration with word DNA in Perl
#!/usr/bin/perl -w # GA demonstration with word DNA (512 bits) use strict; use Data::D...ally written by Abigail # Documentation for the algorithm is at # http://theoryx5.uwin...=> 0, fitness => 0 }; } } __DATA__ about algorithm...2371 days ago
Fill up the form and blast with perl
use WWW::Mechanize; use strict; use warnings; my $mech = WWW::Mechanize->new; my $sequence = 'GCCCGCGGTCTCAGAGA...Blast/'); $mech->submit_form( form_name => 'myForm', fields => { 'Algorithm...2325 days ago
- jitendra@jitendra-UNLOCK-INSTALL[SNP] wget https://github.com/broadinstitute/gatk/release...452807/b52ea0c4-1e27-11e8-8de3-124a69f123c8?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Creden...452807/b52ea0c4-1e27-11e8-8de3-124a69f123c8?X-Amz-Algorithm...
2075 days ago
Perl script to reverse complement a DNA sequence !
#!/usr/bin/perl -w $DNA = 'ACGGGAGGACGGGAAAATTACTACGGCATTAGC'; print "Here is the starting DNA:\n\n"; print...e complement DNA: WRONG:\n\n"; print "$revcom\n"; print "\nThat was a bad algorithm...2043 days ago
- ➜ Tools git:(master) ✗ wget https://github.com/samtools/htslib/releases/download/1.9/hts...339773/f2f10d8a-8a73-11e8-89f4-07e1d9d77b17?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Creden...339773/f2f10d8a-8a73-11e8-89f4-07e1d9d77b17?X-Amz-Algorithm...
2019 days ago
- (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen sol...
1215 days ago
Tadpole is 250x faster than SPADes assembler !
lege@jit-Lenovo-ideapad-320-15ISK:~/Downloads/MyTools/Vir$ tadpole.sh Written by Brian Bushnell.... reassemble=t If ecc is enabled, use the reassemble algorithm. pincer=f If ecc is enabled, use the pincer algorithm...976 days ago
Perl script for Smith-Waterman Algorithm
# Smith-Waterman Algorithm # usage statement die "usage: $0 \n" unless @ARGV == 2; # get sequences from command line my ($seq1, $seq2) = @ARGV; # scoring sc...950 days ago
- blastpgp arguments: -d Database [String] default = nr -i Query File [File In] default = stdin -A Multiple Hits window size (zero for single hit algorithm...
950 days ago
