SneakySnake: A Fast and Accurate Universal Genome Pre-Alignment Filter for CPUs, GPUs, and FPGAs
The first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPG...nake greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short (I...1242 days ago
Applied Computational Genomics Course at UU: Spring 2020
...analytical strategies. A diverse range of biological questions enabled by modern DNA sequencing technologies will be explored including sequence alignment, the identification of geneti...1239 days ago
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QuasR: Quantification and annotation of short reads in R
...ver the whole analysis workflow of typical high throughput sequencing experiments, starting from the raw sequence reads, over pre-processing and alignment, up to quantification. A sing...1006 days ago
Kmer: a suite of tools for DNA sequence analysis
...en two different genomes (cross species). Sim4db: Spliced alignment of cDNA and genomic sequences...4) or related (sim4cc) species. Optimized for high-throughput batched alignment. LEAFF: LEAFF (ah...1001 days ago
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Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation
...ly polishing. Merfin evaluates each variant based on the expected k-mer multiplicity in the reads, independently of the quality of the read alignment and variant caller’s in...772 days ago