Results for "BASE"
Users
Interests: Polymeric scaffold based optoelectronic materials3437 days ago
- Skills: Javascript; Database: MySQL; Microarray data Analysis; Comparative Genomics; NGS; Proteomics; Molecular Phylogenetics; Teaching
2938 days ago
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Blogs
Bioinformatics PhDs - Cover Letter
...ch opening, you will probably need at least two base versions that emphasize diffe...or level. Rather, applicants are assessed based on where they are in their c...them.If you have TA'd some of the courses that (based on the job description) you...3378 days ago
Structural variation: the hidden genomic treasure
...solution of new detection methods, smaller variants (between 50 and 1000 base pairs) can now be accurately...ing data (paired end mapping, split reads, and depth of coverage), array-based approaches have proven to be...2715 days ago
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Bookmarks
Collection of molecular modelling and drug design related tutorial ...
The Rosetta macromolecular modeling, prediction, and design software suite is supported by a large developer community and enjoys a diverse user base. Each year Rosetta developers an...3832 days ago
Bioinformatics software for biologists in the genomics era
The genome sequencing revolution is approaching a landmark figure of 1000 completely sequenced genomes. Coupled with fast-declining, per-base sequencing costs, this influx of DNA seq...3799 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
...d into two categories: string-based model and graph-based model. We therefore list ma...error probabilities for each base. Clone-end-pairing informatio...sembler 1.2 – Karyotype-based Genome Assembler for Brassic...ioinfomatics. Most assemblers based on de Bruijn graph build a d...2698 days ago
Awesome perl frameworks, libraries and software - PART 2
...ull support. This material is based upon work supported by the N...nyevent-nsq - A AnyEvent-based client for NSQ.io mbarbon/l...ko/net-bittorrent - Perl based BitTorrent module available...e files (even on non-MacOSX), based on https://wiki.mozilla...2507 days ago
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Top-level pages
Phylogenetic for Bioinformatics
...has become so popular that taxonomical schemes based solely on molecular data may...ponents even claim that taxonomy was previously based on morphology alone, which o...volutionary Biology Group Paleobiology Database PAUP Phylip Homepag...3959 days ago
Bioinformatics Companies in India
..., Bangalore-560082.www.bigtec.org 5. Bijam Biosciences Private LimitedNagarjuna Hills, Hyderabad 500 082, Indiawww.nagarjunagroup.com 6. Bio Base Databases India Pvt Ltd.Crescent Tower...3938 days ago
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Wire posts
News
DNA Bending Propensity in the Presence of Base Mismatches: Implications for DNA Repair
..., G:A, G:G, T:T, A:A, A+:C) vs. non-defective DNA (containing A:T or G:C base pairs). DNA repair mechanisms likely take advantage of this feature to detect defective DNA based on an increased bending prop...3924 days ago
Illumina reveals first dataset of long reads
...., FastTrack Long Reads. Average read length is around 8,500 base pairs in release dataset.&nbs...www.illumina.com/services/long-read-sequencing-service.ilmn http://blog.basespace.illumina.com/2013/07/22/...3920 days ago
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Opportunity posts
Postdoctoral Associate - Bioinformatics at Duke University Medical Center
...pproaches. In addition, experience in penalized regression methods, data base manipulation; and strong prog...as soon as possible. Appointment could be extended beyond the first year based on additional funding. Fo...3933 days ago
ResearchLabs posts
- ...rediction Comparative Genomics Functional Analysis of Residues on Protein Families Gene/Protein Networks Genome structure & base composition Highthroughp...
3815 days ago
- ...a computational genomicists our work involves examining billions of DNA base pairs and interpreting how va...e functional annotation of genomes with a special emphasis on sequencing-based assays (e.g. ChIP-seq, RNA-S...
1950 days ago
Fun
Bioinformatician become producer/director !!!
...ar Ligand jo dock karega. Alignment to hona hi tha. Mera sequence mera base. Markov aapke hai kaun. Alg...pass hai. BLAST To Hona Hi Tha !! Meri Gene Tumhare Paas Hai Aao Database Search Kare Bioinformatician...3931 days ago
Video
DNA is packaged in a chromosome experiment
...articles in the electron microscope by Don and Ada Olins [4] and their existence and structure (as histone octamers surrounded by approximately 200 base pairs of DNA) were proposed b...3889 days ago
Genetics, epigenetics and disease
...e been identified, there is much to learn about the DNA signals that control them. This lecture described an unusually short DNA sequence, just two base pairs long, CG, which occurs...3885 days ago
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Bio-Scripts
- JitMeta (base) ➜ JitMeta conda create --name JitMetaENV Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1229 days ago
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1229 days ago
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Tags
BASE: a practical de novo assembler for large genomes using long NGS reads
new de novo assembler called BASE. It enhances the classic seed-extension approach by indexing the reads efficiently to generate adaptive seeds that have high probability to appear uniquely in the genome. Such seeds form the basis for BASE to build extension trees and then to use revers...Tags: BASE, practical, de novo, assembler, large, genomes, long, NGS, reads
2037 days ago
Comments
Comment on "A quick guide to Phred scaling"
...he probability of an error in each base call in a sequencing read. He..., the more confident we are in the base call. For example, a Phred sc...culation: The Phred score for each base call is calculated as follows...indicate greater confidence in the base call. The Phred scores are ca...428 days ago
Comment on "CovCal: Coverage / Read Count Calculator"
Sequencing coverage is defined as the average number of reads that covers each base of the reference genome. Estimating the sequencing coverage is very important when...595 days ago
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