Results for "BLAST databases"
Blogs
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same ribbon”) is a collection of contiguous gene...sequences (scaffolds, chromosomes, BACs, etc.). Based on tab – delimited BLAST res...2623 days ago
List of bioinformatics packages for NGS analysis !
Package suites gather software packages and installation tools for specific language.... Contains the very useful Entrez package for API access to the NCBI databases. [ paper-2009 |&nbs...1155 days ago
Structural variation: the hidden genomic treasure
Genome re-sequencing projects have revealed substantial amounts of genetic variation...ure variation sequencing signature (Source: NatRev Genetics) Related tools, databases and publications are listed b...2716 days ago
Basic command-line to run BLAST
The goal of this tutorial is to run you through a demonst...programming language and NCBI BLAST+. Get Data Grab some da...> cow.small.faa BLAST Now we can blast these two c...-version] Now we can run the blast job. We will use blastp, whic...RIPTION Nucleotide-Nucleotide BLAST 2.7...2257 days ago
Popular bioinformatics educational resources !
...h areas include the development of integrated databases and software resources in...es onsite training on specific bioinformatics databases and tools. Also offers bioinf...e include animated tutorials on topicssuch as BLAST, finding mutations in a protein,...2206 days ago
Installing Bandage on Ubunty !
The following instructions successfully build Bandage (https://github.com/rrwick/Banda...andage git:(master) lsBandage.pro BandageTests.pro blast build_scripts command_line CO...outdialog.h/home/urbe/anaconda3/bin/uic ui/enteroneblastquer...2202 days ago
List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-acid sequence pattern that is widespread and has, or is conjectured to have, a biological significance. For prot...2006 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity anal...gd depends on the following software BLASTMCLMUSCLE/MAFFT/PRANKPAMLPhyML...nda conda create -n wgd python=3.5 blast mcl muscle mafft prank paml f...pon_cds.out/Sspon.v20190103.cds.fasta.blast.tsv...1168 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of ho...y) Choice of multiple assembly tools (SPAdes || Unicycler || minia) Blast to reference genome (blastn)...890 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. • ...access, Bioinformatics, 2011; 27(21):2979–2986, GTC Genotype databases compressor with support for f...876 days ago
