New Machine Learning Packages in R
Machine Learning autokeras v1.0.1: Implements an interface to AutoKeras, an open source software library for automated machine learning. See README for...1499 days ago
Useful links to therapy, disease, drug and drug-target network data:
Useful links to therapy, disease, drug and drug-target network data: DrugBank: a bioinformatics- cheminformatics resource combining detailed drug data with comprehensive drug target inf...1433 days ago
Software for genome assembly !
List of bioinformatics tools/Software Website References for genome assembly: 1 Falcon https://github.com/PacificBiosciences/pb-assembly 2 Canu assembler http://canu.rea...1343 days ago
Bioinformatics tools for telomere to telomere assembly !
...ant genomes (Luca Ermini @ermini_luca) Reference: https://www.pacb.com/blog/young-investigators-share-stellar-science-career-advice-and-bioinformatics-tools-at-smrt-leiden-2021/ &...991 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...y. Read Quality Control:Check the qualiy with fastQC.Scripthttps://bioinformaticsonline.com/snippets/view/42540...pters, barcodes and other contaminants from the reads.Scripthttps://bioinformaticsonline.com/snippets/view/42542...1203 days ago
Common Bioinformatics Interview Questions !
...ibility of an interview for a bioinformatics position in the life sciences...worthwhile to plan for future bioinformatics interview questions. Doing th...did your love of science and bioinformatics come from? How the heck did y...rview. The questions from the bioinformatics interview team provide an inc...1197 days ago
Run bash script in Perl program !
...ware/tools, and algorithms in bioinformatics programmes. Different modules...only favoured over Perl, some bioinformatics software, such as the standal.... IPC::Open2 More at https://bioinformaticsonline.com/snippets/view/42919...on: a2p More help at https://bioinformaticsonline.com/snippets/view/42920...636 days ago
Ancient whole genome duplication (WGD) detection tools !
...com/yongzhiyang2 012/WGDdetectorhttps://bmcbioinformatics.biomedcentral.com/articles/10...d: https:// github.com/arzwa/wgdhttps://bmcbioinformatics.biomedcentral.com/articles/10...i-ADHoRe, you need to register at http:// bioinformatics.psb.ugent.be /webtools/i-adho...1154 days ago
Frequently used bioinformatics tools for viral genome analysis !
...E, Keane JA, Kellam P, Otto TD. Bioinformatics. 2015 Jul 15;31(14):2374-6. doi: 10.1093/bioinformatics/btv120. Epub 2015 Feb 28. Ad...bysz, A. & Grabowski, S. BMC Bioinformatics 14, 160 (2013). Kraken: Krak...rmat and SAMtools. Li, H. et al. Bioinformatics 25, 2078-9 (2009). Trimmomat...1046 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignment (B...876 days ago