New Machine Learning Packages in R
Machine Learning autokeras v1.0.1: Implements an interface to AutoKeras, an open source software library for automated machine learning. See README ...1513 days ago
Useful links to therapy, disease, drug and drug-target network data:
Useful links to therapy, disease, drug and drug-target network data: DrugBank: a bioinformatics- cheminformatics resource combining detailed drug data with comprehensive drug target information...1447 days ago
Software for genome assembly !
List of bioinformatics tools/Software Website References for genome assembly: 1 Falcon https://github.com/PacificBiosciences/pb-assembly 2 Canu assembler http://...1357 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for improved consensus accuracy (Arang Rhi...ww.pacb.com/blog/young-investigators-share-stellar-science-career-advice-and-bioinfo...1005 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly method for small to medium-siz...ntrol:Check the qualiy with fastQC.Scripthttps://bioinformaticsonline.com/snippets/view/42540...other contaminants from the reads.Scripthttps://bioinfo...1217 days ago
Common Bioinformatics Interview Questions !
The possibility of an interview for a bioinformatics position in the life sciences may...gly worthwhile to plan for future bioinformatics interview questions. Doing th...here did your love of science and bioinformatics come from? How the heck did y...interview. The questions from the bioinfo...1211 days ago
Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics-related Perl scripts. It is u...only favoured over Perl, some bioinformatics software, such as the standal.... IPC::Open2 More at https://bioinformaticsonline.com/snippets/view/42919...on: a2p More help at https://bioinfo...650 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis,...zhiyang2 012/WGDdetectorhttps://bmcbioinformatics.biomedcentral.com/articles/10...:// github.com/arzwa/wgdhttps://bmcbioinformatics.biomedcentral.com/articles/10...e, you need to register at http:// bioinfo...1168 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong S...Keane JA, Kellam P, Otto TD. Bioinformatics. 2015 Jul 15;31(14):2374-6. doi: 10.1093/bioinformatics/btv120. Epub 2015 Feb 28. Ad...z, A. & Grabowski, S. BMC Bioinformatics 14, 160 (2013). Kraken: Krak...1060 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignmen...890 days ago