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3960 days ago
Computer simulation of genetic mechanism !!
...alescent simulator of genomic diversity under arbitrarily complex evolutionary sc...ion, Quantitative Traits, and Selection https://bitbucket.org/dkessner/forqs...ry preparation with parameter estimation http://bit.ly/rlsim-git Rmetasim...2995 days ago
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Barrnap: Bacterial ribosomal RNA predictor
...s input, and write GFF3 as output. It uses the new NHMMER tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style. NHMMER binaries for 64-bit Linux and Mac OS X are includ...2570 days ago
Basic Notions in Molecular Biology and Genetics
...pts applied in molecular biology and genetics, also it contains a little bit of the experience that one of...Bioinformatics and Pharmacogenetics), was stablished on 2007, took it a bit of years to make it real this...3722 days ago
Statistics Using R with Biological Examples
This book is a manifestation of my desire to teach researchers in biology a bit more about statistics than an ordinary introductory course covers and to introduce the utilization of...2550 days ago
Find certain files/documents in Linux OS
...pe f ! -perm 7779. Find SGID Files with 644 PermissionsFind all the SGID bit files whose permissions set to 644.# find / -perm 264410. Find Sticky Bit Files with 551 PermissionsFin...3701 days ago
A guide for complete R beginners :- Installing R packages
...package we use the command:> install.packages("ggplot2", lib="/data/Rpackages/")> library(ggplot2, lib.loc="/data/Rpackages/") It’s a bit of a pain having to type /dat...3378 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...alescent simulator of genomic diversity under arbitrarily complex evolutionary sc...e Carlo simulation of sequence evolution http://bit.ly/rlsim-gitpIRS Profile-base...on of copy number profiles along a tree. http://bit.ly/simcopySIMLA SIMLA is a SI...3757 days ago
Perl one-liner for bioinformatician !!!
...FASTQ, SAM, VCF, etc.) and some tools for manipulating them (fastx toolkit, samtools, vcftools, etc.), there are still times where knowing a little bit of Perl onliner is extremely...3648 days ago
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Post-Doc Positions at the Institute of Evolution, University of Haifa, Haifa, Israel
...d contact information of 3 referees, to Prof of Research Aaron Avivi (aaron@research.haifa.ac.il) AND Dr. Imad Shams (imadshams@gmail.com). (http://bit.ly/1lywShk) aaron@research.ha...3551 days ago
Software engineer/Computational Biologist - Equinome Ltd., Dublin, Ireland
...lised genomics interface. This position is a great opportunity for an ambitious, self-motivated individua...tted before Friday, 26 September 2014 using the following link: http://bit.ly/WgbhxS Note: Full infor...3551 days ago
Bioinformatics -- Understanding of living systems through information science
...g it with the genomes of other organisms, to see where it's the same and where it's different. In that way, the content of the genome is decoded bit by bit, using computers. By contrast...3937 days ago
Genomics and Personalized Medicine Breakthroughs
http://bit.ly/e8QGzY Human genome mapping is now enabling a breakthrough in medical innovation -- personalized medicine. What does this mean for patients? We can now iden...3645 days ago
Blast result parser with Perl and Bioperl
...accesion number, length, description, E value, bit score, query frame, query sta...accession_number\tlength\tdescription\tE value\tbit score\tframe\tquery_start\t";...cance . "\t"; #get the bit score of the hit print OU...2934 days ago
Perl subroutine to read and write files
...'write',$file,\$string) # InOut('write',$file,\@array) #$string = "YO!"; #InOut('write','file.txt',\$string); sub InOut { my($bit,$file,$data) = @_; if($bit eq 'read'){ open InOut,"...2886 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3546 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...ill also break up contigs/scaffolds at spurious sites to form smaller (but hopefully correct) contigs. Reapr runs pretty slowly, sadly, Reapr is a bit fuzzy with contig names, but...1357 days ago
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