Results for "Capture"
Blogs
Run bash script in Perl program !
...= open3(\*CHLD_IN, \*CHLD_OUT, \*CHLD_ERR, 'command arg1 arg2', 'optarg',...); It is very similar to IPC::Open2 with the capability to capture all three file handles of the...641 days ago
Bookmarks
Next generation sequencing(NGS) books
Employing different technologies, the purpose of NGS platform is to decode the identity or modification on the nucleotides. NGS platforms evolve quickly and capture the main stream. This bookmark is created to provide NGS online books links.3632 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...de highly accurate alignments, MOSAIK employs a hash clustering strategy coupled with the Smith-Waterman algorithm. This method is well-suited to capture mismatches as well as short i...2910 days ago
- +9 more Bookmarks
Files
Master Thesis: Trans-membrane topology prediction through Markov based decoders
...ne part. The closed association between the biological and Markov states allows us to infer which part of the model architecture are important to capture the information which encodes...3948 days ago
Prepare for Coding Interview !
...urced from Reddit. People say that interviews at Google will cover as much ground as possible. As a new college graduate, the ground that I must capture are the following. Part of th...848 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...s. Kozarewa et al, Nature Methods 6(4):291-5, 2009 PubMedCentral Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture. Rohland & Reich, Genome...3783 days ago
Commercial and public next-gen-seq (NGS) software
...estimates, and uses it to improve the spatial resolution of predicted binding sites. MACS also uses a dynamic Poisson distribution to effectively capture local biases in the genome se...3522 days ago
- +4 more Top-level pages
News
C-DAC launch supercomputing facility "Param Bio Blaze" !!!
...ons. Param Bio Blaze will help have a larger storage space and better computing facility for the bioinformatics sector. The facility will help capture the movement of molecules and...3732 days ago
- ...creted in the urine. To create the test strips, the researchers first coated nitrocellulose paper with antibodies that can capture the peptides. Once the peptides are captured, they flow along the strip a...
3725 days ago
- +1 more News
Opportunity posts
- ...of following position to work under a collaborative research project entitled “Development and application of high resolution genome conformation capture technology to investigate gen...
2901 days ago
Video
Computer Theory & Genetics: George Chao at TEDxUMNSalon
...tics in Drosophila, computational techniques for analyzing protein interactions, and helping with the development of algorithms to analyze motion capture data of patients with neck pa...3919 days ago
Bio-Scripts
- (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen so...
1219 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...X', 'Tie::File', 'Try::Tiny', 'Data::Dumper', 'File::Basename', 'Bio::SeqIO', 'FindBin', 'File::Remove', 'Capture::Tiny', 'File::Temp',...1164 days ago
- +2 more Bio-Scripts
Tags
- HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for gene regions of interest, especially for phylogenetics. HybPiper is a suite of Python scripts that wrap and connect bioinformatics tools in order to extract target sequences from high-throughpu...
Tags: Bioinformatics, Analysis, NGS, HybPiper, Genome, Network, Capture, Genes
2743 days ago
- Beside visualizing chromatin interaction data, you can also seamlessly browse other omics data such as ChIP-Seq or RNA-Seq for the same genomic region, and gain a complete view of both regulatory landscape and 3D genome structure for any given gene. You can also check the expression of any querie...
Tags: 3DGenome, Browser, explore, chromatin, interaction, data, Hi-C, ChIA-PET, Capture, Hi-C, PLAC-Seq
1202 days ago
- +2 more Tags
Comments
Comment on "Sibelia: A comparative genomics tool"
...To understand the details, please see the next section and [1]. The "loose" option produces longer blocks and better coverage, while "fine" can capture small-scale rearrangements, f...1288 days ago
Comment on "Installing Perl environment on Linux"
...hors/id/D/DC/DCANTRELL/Test-Differences-0.64.tar.gz ... OKConfiguring Test-Differences-0.64 ... OK==> Found dependencies: Capture::Tiny, Text::Diff--> Working on Capture::TinyFetching http://www.cpan...2129 days ago
