Results for "Check"
Bio-Scripts
Bash commandline to install Anaconda !
#The line begins with $ are the commands $ mkdir tmp $ cd tmp/ $ curl -O https://repo.anaconda.com/archive/Anaconda3-2019.03-Linux-x86_64.sh % Total %...1549 days ago
Bash command to install bwa, samtools, picard !
...amd-2 tmp]$ conda install bwa Collecting package metadata (repodata.json): done Solving environment: - The environment is inconsistent, please check the package plan carefully T...1549 days ago
Perl script to delete the adjacent repeats !
...eated character .... $string='ATTTTTTGGC'; # This should be converted to ATGC $string =~ s/(\w)\1/$1/g; print $string; #For more helps ... check out this #This bit of code...1544 days ago
- (py36) [wsu29@bladeamd-2 lofreq]$ lsb_release -a LSB Version: :base-4.0-amd64:base-4.0-noarch:core-4.0-amd64:core-4.0-noarch:graphics-4.0-amd64:graphics-4.0-noarch:printing-4.0-amd64:printing-4.0-noarch Distributor ID: CentOS Description: CentOS release 6.7 (Final) Release: 6.7 Codename: Final
1532 days ago
Commands to install conda in Ubuntu !
...ions on the import, possession, use, and/or re-exp ort to another country, of encryption software. BEFORE using any encryption soft ware, please check your country's laws, regulati...1505 days ago
- ...reports and requests to: https://github.com/jnarayan81/autoConTAMPR/issues Operating system: linux Perl executable at: /usr/bin/perl Please check manual. Usage: autoConT...
1503 days ago
- The procedure to find os name and version on Linux: #Open the terminal application (bash shell) #For remote server login using the ssh: ssh user@server-name #Type...
1501 days ago
Python script to check sequence length in multifasta file
#!/usr/bin/python from Bio import SeqIO import sys cmdargs = str(sys.argv) for seq_record in SeqIO.parse(str(sys.argv[1]), "fasta"): output_line = '%s\t%i' % \ (seq_record.id, len(seq_record)) print(output_line)1209 days ago
Download minikraken database !
..._UPDATE/database150mers.kmer_distrib minikraken2_v2_8GB_201904_UPDATE/database200mers.kmer_distrib minikraken2_v2_8GB_201904_UPDATE/hash.k2d #Check for pe reads #kraken2 --use-...1208 days ago
Create random 10000 SNPs in genome !
...pl -refseq SGDref.R64-2-1.dups.fa -snp_count 10000 -prefix simuSNP [Sun Jan 10 16:05:57 2021] Starting simuG .. [Sun Jan 10 16:05:57 2021] Check specified options .. Running...1205 days ago
