Results for "Chip"
Bookmarks
Encode sequencing data freely available to download and use for academic means
...ty assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that interact wi...ing modified histones and transcription factors, followed by sequencing (ChIP-Seq). More information: htt...3699 days ago
- ...ity control of the raw reads, processing of the raw reads for the subsequent analysis and initial quality assessment of the library. ChIP Seq Protocol ChIP-Seq In this protocol we di...
3647 days ago
- ...ing included whole genome sequencing(WGS), transcriptome sequencing (whole cDNA sequencing, RNA-seq), digital gene expression sequencing (Tag-Seq), ChIP-Seq, and so on. And there are...
3228 days ago
- ...om illumina sequencing machines onto a reference genome. It's recommended for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy excels in the map...
2900 days ago
- ...biological roles of motifs (GOMo), measuring the positional enrichment of sequences for known motifs (CentriMo), and analyzing ChIP-seq and other large datasets (MEME-ChIP). The MEME Suite is comprise...
2684 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to di...2567 days ago
GeneProf: analysis of high-throughput sequencing experiment
...se data produced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generation Sequenc...ws (cp. Concept 'Workflows'). Integrated Analysis:Analysis of ChIP-seq and RNA-seq&nbs...2489 days ago
snakepipes: A toolkit based on snakemake and python for analysis of NGS data
snakePipes are flexible and powerful workflows built using snakemake that simplify the analysis of NGS data. DNA-mapping* ChIP-seq* RNA-seq* ATAC-seq* scRNA-seq Hi-...1796 days ago
Qualimap2: Evaluating next generation sequencing alignment data
...feature counts. Supported types of experiments include: Whole-genome sequencing Whole-exome sequencing RNA-seq (speical mode available) ChIP-seq...2057 days ago
GeneOverlap: An R package to test and visualize gene overlaps
...r off. Tri-methylation on lysine 4 of histone H3 (H3K4me3) is associated with gene activation and its genome-wide enrichment can be mapped by using ChIP-seq experiments. Because of i...1949 days ago
