Encode sequencing data freely available to download and use for academic means
...ty assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that interact wi...ing modified histones and transcription factors, followed by sequencing (ChIP-Seq). More information: htt...3716 days ago
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ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to di...2583 days ago
GeneProf: analysis of high-throughput sequencing experiment
...se data produced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generation Sequenc...ws (cp. Concept 'Workflows'). Integrated Analysis:Analysis of ChIP-seq and RNA-seq&nbs...2506 days ago
snakepipes: A toolkit based on snakemake and python for analysis of NGS data
snakePipes are flexible and powerful workflows built using snakemake that simplify the analysis of NGS data. DNA-mapping* ChIP-seq* RNA-seq* ATAC-seq* scRNA-seq Hi-...1812 days ago
Qualimap2: Evaluating next generation sequencing alignment data
...feature counts. Supported types of experiments include: Whole-genome sequencing Whole-exome sequencing RNA-seq (speical mode available) ChIP-seq...2073 days ago
GeneOverlap: An R package to test and visualize gene overlaps
...r off. Tri-methylation on lysine 4 of histone H3 (H3K4me3) is associated with gene activation and its genome-wide enrichment can be mapped by using ChIP-seq experiments. Because of i...1966 days ago