Results for "Chip-Seq"
Users
Skills: ChIP-seq pipeline tools3519 days ago
- Brief description: genome annotation, transcriptome, RNA-seq, ChIP-seq, ChRIP, PARCLIP, cancer, noncoding, long-noncoding RNAS, epigenetics
1291 days ago
Blogs
Integrative RNA and ChIP-Seq analysis of regulatory T-cells
Integrative RNA and ChIP-Seq analysis of regulatory T-cells , a Strand NGS application note desc...xpression profiles from RNA-Seq and FoxP3 DNA-protein binding sites from ChIP-Seq are integrated. For mor infor...3191 days ago
Calling narrow and broad peaks from ChIP-Seq data
...peaks) and enriched regions of histone modification (broad peaks) from ChIP-Seq data.Read the benchmarking study on Calling narrow and broad peaks from ChIP-Seq data in Strand NGS by Rohit G...3191 days ago
- +8 more Blogs
Bookmarks
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University provide an NGS workshop tutorial at http://chagall.med.cornell.edu/NGScourse/ You can also add you...3481 days ago
Public Databases for Bioinformatics !
https://www.nature.com/articles/s41467-020-17155-yServer Infrastructure: File Server: dhara: Synology 3614 Storage Appliance 4 Core Xeon 108TB disk storage 10Gb...1133 days ago
- +66 more Bookmarks
Pages
- I found several useful bioinformatics articles which exaplain, define and elaborate the bioinformatics in scientific way. Therefore, instead of writting it again I...
3915 days ago
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short...2680 days ago
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Top-level pages
Bioinformatics Courses Around the World
Bioinformatics Courses around the world Here is the list Bioinformatics courses offered around the world. Reasons for constructing this page are: To show the extent...3937 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...21:2224-2241, 2011 Full Text Chromatin immunoprecipation analysis: ChIP-seq ChIP-seq: advantages and challenges of...ver-representation of specific ontology categories among genes near ChIP-seq peaks Next-gen-seq software...3773 days ago
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Wire posts
News
High Density Sheep SNP Genotyping Chip released!!!
If you are working on Sheep genomics then there is a good news for you. FarmIQ in conjunction with Illumina and the International Sheep Genomics Consortium (ISGC) are to...3891 days ago
RNA-Seq Data Pathway and Gene-set Analysis Workflows
It describe the GAGE (Luo et al., 2009) /Pahview (Luo and Brouwer, 2013) workflows on RNA-Seq data pathway analysis and gene-set analysis. The gage package (2....3827 days ago
- +9 more News
Opportunity posts
Postdoctoral position in bioinformatics @ Sweden
Information about the department The Department of Mathematical Sciences at Chalmers University of Technology and the University of Gothenburg has about 170 faculty and...3942 days ago
Clinical Genomics & Informatics Europe at Lisbon, Portugal
Bio-IT World and Cambridge Healthtech Institute's fifth international Clinical Genomics & Informatics Europe conference will feature four main tracks on Clinical Exo...3911 days ago
- +29 more Opportunity posts
ResearchLabs posts
- ...onment interactions by automated phenotyping, using image analysis, machine learning, sparse model building and causal inference. DNA-, RNA- and ChIP-Seq and their applications to gen...
3884 days ago
- ...ools for the analysis of high dimensional data arising from "Multi-omics" applications. In particular, current activities involve the analysis of ChIP-seq and RNA-seq experiments....
2957 days ago
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Bio-Scripts
Check if your coputer ready to use BioPerl
#!/usr/bin/perl use strict; use warnings; #bioperl example code use strict; use warnings; #make the bioperl module (class) accessible to your program use Bio::Seq; print"ok - ready to use Bio::Seq";2911 days ago
Find and replace ambiguous characters in fasta file with Perl and Bioperl
#!/usr/bin/perl -w my $usage="\nUsage: $0 [-h] [-m char] [fastaFileName1 ...]\n". " -h: help\n". " -m: missing character\n". "Print out the name of s...2908 days ago
- +55 more Bio-Scripts
Groups
Python is a programming language that lets you work more quickly and integrate your systems more effectively. Python is an easy to learn, powerful programming language....3940 days ago
Tags
Next Generation Sequencing (NGS)
This group meant to discuss different sequencing methods and their data analysis. Now, sequencing is almost one of the most popular technique scientific fraternity pursue worldwide to comprehand the genomic complexity of all the organism and also used to reveal genetic factors responsible for dif...Tags: Sequencing, NGS, Whole genome resequencing, denovo sequencing, exome sequencing, methylated sequencing, RNA sequencing, Bisulfite sequencing, targeted sequencing, Chip-Seq, dRAD and ddRAD sequencing, etc
3901 days ago
Comments
Comment on "Commercial and public next-gen-seq (NGS) software"
HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data http://www.biomedcentral.com/1471-2105/15/280/abstract3542 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
R package SPP for chip-seq analysis. It can read quite a few aligner's output file. Here is the original package tutorial. http://compbio.med.harvard.edu/Supplements/ChIP-seq/tutorial.htmlHere is my versi...3617 days ago
- +3 more Comments
