1416 days ago
Command to sort the bed file !
#Command to sort the bed file sort -V -k1,1 -k2,2 test.bed1402 days ago
picard tools command to get some insert statistics
#picard tools to get some insert statistics to see whether our reads seem to be in the correct place #module load picard/2.0.1 java -Xmx16g -XX:PermSize=8g -jar $PI...1350 days ago
1230 days ago
Set up WGD environment using conda !
...olctl-2.1.0 tornado-6.1 wgd-1.2 (wgd) ➜ wgd git:(master) wgd zsh: correct 'wgd' to 'gd' [nyae]? n Usage: wgd [OPTIONS] COMMAND [ARGS]... Welcome to the wgd command line interface!...1217 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...lared with attribute warn_unused_result [-Wunused-result] system(command.append(outputPath).c_str());...lared with attribute warn_unused_result [-Wunused-result] system(command.append(outputPath).c_str());...1217 days ago
Command to create conda environment !
# using pip pip install -r requirements.txt # using Conda conda create --name --file requirements.txt #Using yaml conda env create -f environment.yml #Listing env conda env list #Create env with python36 conda create -n myenv python=3.61214 days ago
1177 days ago
Conda command to install checkV
(mENV) [jnarayan@hn1 Monkey_Pox]$ conda install -c conda-forge -c bioconda checkv Collecting package metadata (current_repodata.json): done Solving environment: done...649 days ago
1172 days ago