Tools to detect synteny blocks regions among multiple genomes
...ner is being developed as an application to visualize and interrogate comparisons among multiple complete geno...erved synteny blocks. It reconstructs synteny blocks between pairwise comparison of multiple genomes. The reco...2624 days ago
List of universities offering Bachelor, Master or PhD bioinformatics degree in Malaysia
...countries, particularly India and China, are witnessing the fastest growth and are anticipated to emerge as the dominating forces in future. The Comparison of Bioinformatics Industry be...2523 days ago
Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3924 days ago
Latest paper on comparison of mapping tools
A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics, 14(1):184, 2013. http://bmi.osu.edu/hpc/software/benc...3911 days ago
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Virtual Bioinformatics Online Tutorial
...he Gene and Bioinformatics biocomputing, on internet (Univ of) Bielefeld , Germany Virtual School of Natural Sciences Sequence comparisonUniversite de) Rouen , France...3935 days ago
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Useful Links for Bioinformaticians
...Terms Similarity Search Tutorials An Overview of Sequence Comparison Algorithms in Molecular Bill...tutorial Pedestrian guide to analysing sequence databases Sequence Comparison (Keith Robison) Database Res...3144 days ago
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Structural polymorphism analysis from NGS data
...and phenotypic adaptation. The successful candidate will be in charge of the detection of polymorphisms including structural variants, of the comparison of multiple and diverse genom...3963 days ago
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Bioinformatics -- Understanding of living systems through information science
...s. Additionally, at the genome level, mutations called rearrangements, such as inversions, transpositions, and duplications, occur. The genome comparison system developed by the Sakak...3931 days ago
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R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses ge...e=commandArgs(TRUE)[3] library(genoPlotR) #Read fastANI output comparison...1115 days ago
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Tryst with a Bioinformatician # Dr Altan Kara
...bioinformatics package is R/Bioconductor. The reason why I like this package is, it provides lots of useful tools for comprehensive analysis and comparison of high-throughput experiment...2376 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determination of read compatibility with targets) Software (C++) https://pachterlab.github.io/kallisto/ Sailfish Estimation of isoform abundances from reference sequences and RNA-seq data (k-...Tags: Alignment-free, sequence, comparison, tools, next-generation, sequencing, analysis
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Comment on "Tools to detect synteny blocks regions among multiple genomes"
Genome synteny analysis is the comparison of the genomic structure and gene content of two or more related species. Here are some general steps to follow for conducting a genome synteny...437 days ago
Comment on "Sibelia: A comparative genomics tool"
...improve coverage. References ========== 1. Ilya Minkin, Nikolay Vyahhi, Son Pham. "SyntenyFinder: A Synteny Blocks Generation and Genome Comparison Tool" (poster), WABI 2012 ht...1299 days ago