Results for "Contiguous"
Blogs
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same ribbon”) is a collection of contiguous genes located on the same chromosome. These block regions have mostly been...2608 days ago
- ...ence/ reconstruction (ASR) tools: inferCars Reconstructs contiguous regions of an ancestral genom...ck of being overly conservative, i.e. of generating a large number of contiguous ancestral regions (CARs). AN...
2528 days ago
- +2 more Blogs
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- ...cing (GS20, FLX or Titanium) Ion Torrent Solexa (Illumina) sequencing (in development) Pacific Biosciences sequencing into contiguous sequences (called contigs). O...
2949 days ago
- ...hnological progress has greatly facilitated de novo genome sequencing. However, de novo assemblies consist in many pieces of contiguous sequence (contigs) arranged i...
2809 days ago
- +6 more Bookmarks
Files
Evaluation of genome assembly software based on long reads
TGS technologies have been used to produce highly accurate de novo assemblies of hundreds of microbial genomes and highly contiguous reconstructions of many dozens of plant and animal g...1918 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...Assemblies Merger for Next Generation SequencingGAM-NGS is able to merge two or more assemblies and it rteturns an improved assembly (more contiguous and more correct). GAM-NGS sh...2684 days ago
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...rmation from short sequence reads by stringently assembling them into contiguous sequences that can be used to...gy assembler. It merges two sets of pre-assembled contigs into a more contiguous and consistent assembly....2684 days ago
Wire posts
News
Phased Human Genome Assembly !
...acBio website: Blog post: Data Release: Highest-Quality, Most Contiguous Individual Human Genome Assem...guru.com/2018/10/08/pacific-biosciences-releases-highest-quality-most-contiguous-individual-human-genome-assem...2034 days ago
SPADes team announce new version SPADes v3.15
...viridae genomes; - Meta-Viral and RNA-Viral pipelines for metagenomic and metatranscriptomic data defining viral genomes; -New trusted contiguous use algorithm; -Switched...1204 days ago
Bio-Scripts
Pack a perl program with their dependencies on Ubuntu !
...twarelongreads TGS technologies have been used to produce highly accurate de novo assemblies of hundreds of microbial genomes and highly contiguous reconstructions of many dozen...1509 days ago
Tags
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of those intervals from their observed adjacencies in modern species. We combine the results from this method with data from chromosome painting experiments to produce a map of an early mammalian genome that accounts fo...Tags: Reconstruction, Contiguous, Regions, Ancestral, Genome, Bioinformatics, CAR
2542 days ago
DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications
we propose a heuristic algorithm, called DUPCAR, for reconstructing ancestral genomic orders with duplications. The method starts from the order of genes in modern genomes and predicts predecessor and successor relationships in the ancestor. Then a greedy algorithm is used to reconstruct the ance...Tags: DUPCAR, Reconstructing, Contiguous, Ancestral, Regions, Duplications
2174 days ago
Comments
Comment on "Run miniasm assembler on nanopore reads !"
...g and (ii) assembly. Designed for long, noisy reads, they do not have a correction or consensus step, and therefore the resulting assemblies are contiguous (i.e. long) but very noisy (i...2173 days ago
- ...GB). If memory usage exceed the limit, programs warn but continue. OUTPUT FILES PREFIX_contig.fa : assembled contiguous sequences PREFIX_conti...
2797 days ago
