Results for "Correct"
Blogs
BBTools for bioinformatician !
...ompletes successfully and says the reads were correctly paired, then you can simply...th their genomic origin, so you will know the correct answer when mapping.Bear in m...and from the right end; both will retain the correct original qualities. And " /1"...2273 days ago
List of motif discovery tools !
...or information on prokaryotic proteins that undergo serine, threonine, or tyrosine phosphorylation. PNU -- Protein Naming Utility Determine correct names for proteins. POOD...1995 days ago
- +1 more Blogs
Bookmarks
- ...checks a number of properties that should hold true for a correct assembly (e.g., mate-pairs are aligned at the correct distance from each other in t...erall estimate of the likelihood a particular assembly is correct. Home Page: V...
2784 days ago
- ...e parameters. For more information, refer to the manual. KmerGenie can be used to determine the best k-mer size, minimum abundance of correct k-mers, and genome size estim...
2707 days ago
- +24 more Bookmarks
Files
Master Thesis: Trans-membrane topology prediction through Markov based decoders
...MPs involves assembling the segments into a bundle. This requires the correct assignment of the buried and...In a cross validated test on single sequences, our trans-membrane MM, correctly predicts the entire topolog...3947 days ago
Pages
Linux SSH Client Commands for Bioinformatics
...dquo;yes” to the message below, is to call your sysadmin and identify why you got the host key changed message and verify whether it is the correct host key or not.localhost$ ss...3708 days ago
Genome Assembly Tools and Software - PART2 !!
...bly (more contiguous and more correct). GAM-NGS shows its full pote...dering contigs, closing gaps, correcting sequence errors and transf...also provides tools for error correction, sequence-to-read alignmen...ke 0.3.5 – Detect & Correct Substitution Sequencing Error...2688 days ago
Top-level pages
- ...a raw DNA sequence at an annotated protein sequences: establish the correct order of sequence contigs to...n relationships can be detected at the 20% identity level and below, a correct sequence alignment becomes ve...
3949 days ago
- ...he above command: reformat.sh in=x#.fq out=y.fq De-interleave reads: reformat.sh in=x.fq out1=y1.fq out2=y2.fq Verify that interleaving appears correct, assuming Illumina namimg con...
2716 days ago
- +7 more Top-level pages
Wire posts
News
- ...hting diseases, according to a March 3 story in the New York Times. Scientists hope Crispr might also be used for genomic surgery, as it were, to correct errant genes that cause disea...
3716 days ago
- ...he study of biodiversity on Earth. DNA Barcoding began duringrecent decades with the proposal that organisms could be assigned to their correct species using a short gene&nb...
2478 days ago
Opportunity posts
Research Fellow @ Mendel laboratory
...dancy and lethality analysis, gene set essentiality); (iii) developing of ad-hoc software solutions/routines on clusters of CPUs and GPUs. The correct cultural background (training...3816 days ago
Bioinformatics position at IRCCS Casa Sollievo della Sofferenza
...ndancy and lethality analysis, gene set essentiality); (iv) developing of ad-hoc software solutions/routines on clusters of CPUs and GPUs. The correct cultural background (training...3527 days ago
Video
DNA is packaged in a chromosome experiment
...y higher order structures to eventually form a chromosome; this both compacts DNA and creates an added layer of regulatory control, which ensures correct gene expression. Nucleosomes...3879 days ago
Bio-Scripts
BASH script for SelfBLAST a genome
...-dbtype nucl -out $MYDB fi if [ $1 = "extract" ] then echo "Extracting the sequence $2 for you from $FASTAFILE -- MAKE SURE U HAVE ADDED CORRECT NAME" samtools faidx Merge...2654 days ago
- .../configure --prefix=/home/urbe/Tools/bloomfilter && make install zsh: correct 'install' to 'INSTALL' [nyae]...boost/path --prefix=/home/urbe/Tools/bloomfilter && make install zsh: correct 'install' to 'INSTALL' [nyae]...
2153 days ago
- +9 more Bio-Scripts
Tags
WGS Celera Assembler version 8.3rc2
These are release notes for Celera Assembler version 8.3rc2, which was released on May 24, 2015.This distribution package provides a stable, tested, documented version of the software. The distribution is usable on most Unix-like platforms, and some platforms have pre-compiled binary distri...Tags: Bioinformatics, wgs-assembler, WGS, PBcR, Pacbio, Correct, Packages, Tools, Simulation, Fastq
2584 days ago
LSC: Improving PacBio Long Read Accuracy by Short Read Alignment
Added Command line argument support. Multi-stage execution modes. Support for parallelization. Now execution proceeds in batches of long reads the size of which can be set by --long_read_batch_size N. Better compressed intermediate files. Added utilities folder. Added support for multiple ...Tags: LSC, Improve, correct, PacBio, Long, Read, Accuracy, Short, Read, Alignment
2070 days ago
Comments
Comment on "REAPR: a universal tool for genome assembly evaluation"
...ads mapping too far or too close to each other. The program will also break up contigs/scaffolds at spurious sites to form smaller (but hopefully correct) contigs. Reapr runs pretty s...1339 days ago
- ...ons] \ [-pacbio-raw | -pacbio-corrected | -nanopore-raw | -nanopore...only a specific stage, use: -correct - generate corrected reads -t...an overlap between two raw uncorrected reads. For lower quality re...ight off the machine. -pacbio-corrected <files> Reads have be...
2101 days ago
- +2 more Comments
