Osprey: Network Visualization System
Osprey is a software platform for the visualization of complex biological interaction networks. Osprey builds data-rich graphical representations from Gene Ontol...1948 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
UpSetR generates static UpSet plots. The UpSet technique visualizes set intersections in a matrix layout and introduces aggregates based on groupings and qu...1939 days ago
wtdbg2: A fuzzy Bruijn graph approach to long noisy reads assembly
Wtdbg2 is a de novo sequence assembler for long noisy reads produced by Pac...tion and then builds the consensus from intermediate assembly output. ./wtdbg2 -x rs -g 4.6m -t 16 -i read...1933 days ago
1637 days ago
SeQuiLa-cov: A fast and scalable library for depth of coverage calculations
...enchmarking/benchmarking.html#depth-of-coverage. An archival copy of the code and supporting data is also available via the GigaScience database GigaDB • Project name: SeQuiLa...1618 days ago
3D de novo assembly (3D DNA) pipeline
For a detailed description of the pipeline and how it integrates with other tools designed by the Aiden Lab see Genome Assembly Cookbook on http://aide...1569 days ago
Best Practices for Variant Calling with the GATK
The presentations below were filmed during the March 2015 GATK Workshop, part of the BroadE Workshop series. At the time of this workshop, the current version of Broa...1550 days ago
GSP4PDB: a web tool to visualize, search and explore protein-ligand structural patterns
GSP4PDB is a user-friendly and efficient application to sear...er new patterns of protein-ligand interaction. GSP4PDB is part of the services...Group of the University of Talca http://gdblab.com/gsp4pdb/gsp4pdb2/ htt...1528 days ago
Genobuntu: Package for Next Generation Sequencing and Genome Assembly
...in the field of genome assembly. Features Velvet MiB SSAKE EULER VCAKE ABySS ALLPATHS Celera SHARCGS Allpaths IDBA TAIPAN Edena SOAPdenovo Maq IDBA-UD No. of Reads present in...1463 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
...e updated to Ensembl 96. New bacterial and fungal genomes based on STRING-db! Just paste your gene list to...2031 genomes (including bacteria and fungi) are annotated based on STRING-db (v.10). In addition, it also...1448 days ago