Comment on "Benchmarking Perl Module !"
...Benchmarking a Perl module involves measuring the performance of the module in terms of its execution t...uide to benchmarking a Perl module using the Benchmark module:...unction from a hypothetical module named "MyModule": use My...he performance of your Perl module to other modules or to prev...421 days ago
Comment on "Tools for RNA classification"
...sequences. It uses a combination of HMM-based and comparative sequence analysis approaches to predict tRNA genes. These tools can be used individually or in combination to achi...427 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...two or more related species. Here are some general steps to follow for conducting a genome synteny analysi...e genes that are homologous and have a common ancestor, but have diverged due to speciation. Determine th...429 days ago
Comment on "Basic command-line to run BLAST"
...searches. Choose the database: BLAST searches can be performed against many different databases, including the NCBI GenBank, RefSeq, and non-redundant databases. Choose the da...429 days ago
Comment on "CovCal: Coverage / Read Count Calculator"
Sequencing coverage is defined as the average number of reads that covers each base of the reference genome. Estimating the sequencing coverage is very...589 days ago
Comment on "Phylogenetic for Bioinformatics"
Nice evolutionary distance caculation methods @ https://www.cs.rice.edu/~nakhleh/COMP571/Slides/Phylogenetics-DistanceMethods-Full.pdf596 days ago
Comment on "Estimate Genome Size with Jellyfish and R"
Jellyfish manual at http://www.genome.umd.edu/docs/JellyfishUserGuide.pdf987 days ago
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Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Bioinformatics Journals Ranks from Google Scholar 1: Bioinformatics Journals (the most recent Impact Factor :: 5-year Impact Factor) WIREs Computational Molecular...1110 days ago
Comment on "Installing BLAT on Linux !"
...Unix users is via Git following the instructions at: http://genome.ucsc.edu/admin/git.html Or, fetch the...entire source in a single file: rsync -azvP rsync://hgdownload.soe.ucsc.edu/genome/admin/jksrc.zip ./ or...1217 days ago