Comment on "Benchmarking Perl Module !"
...Benchmarking a Perl module involves measuring the performance of the module in terms of its execution t...uide to benchmarking a Perl module using the Benchmark module:...unction from a hypothetical module named "MyModule": use My...he performance of your Perl module to other modules or to prev...430 days ago
Comment on "Tools for RNA classification"
...sequences. It uses a combination of HMM-based and comparative sequence analysis approaches to predict tRNA genes. These tools can be used individually or in combination to achi...436 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...two or more related species. Here are some general steps to follow for conducting a genome synteny analysi...e genes that are homologous and have a common ancestor, but have diverged due to speciation. Determine th...438 days ago
Comment on "Basic command-line to run BLAST"
...searches. Choose the database: BLAST searches can be performed against many different databases, including the NCBI GenBank, RefSeq, and non-redundant databases. Choose the da...438 days ago
Comment on "CovCal: Coverage / Read Count Calculator"
Sequencing coverage is defined as the average number of reads that covers each base of the reference genome. Estimating the sequencing coverage is very...598 days ago
Comment on "Phylogenetic for Bioinformatics"
Nice evolutionary distance caculation methods @ https://www.cs.rice.edu/~nakhleh/COMP571/Slides/Phylogenetics-DistanceMethods-Full.pdf605 days ago
Comment on "Estimate Genome Size with Jellyfish and R"
Jellyfish manual at http://www.genome.umd.edu/docs/JellyfishUserGuide.pdf996 days ago
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Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Bioinformatics Journals Ranks from Google Scholar 1: Bioinformatics Journals (the most recent Impact Factor :: 5-year Impact Factor) WIREs Computational Molecular...1119 days ago
Comment on "Installing BLAT on Linux !"
...Unix users is via Git following the instructions at: http://genome.ucsc.edu/admin/git.html Or, fetch the...entire source in a single file: rsync -azvP rsync://hgdownload.soe.ucsc.edu/genome/admin/jksrc.zip ./ or...1225 days ago