1550 days ago
New Machine Learning Packages in R
...tarted. quanteda.textmodels v0.9.1: Implements methods for scaling models and classifiers based on sparse matrix objects representing textual data. It includes implementations...1501 days ago
Useful links to therapy, disease, drug and drug-target network data:
...ource combining detailed drug data with comprehensive drug targe...Drug-Target Network: network data of 890 drugs and 394 target h...Thomson Investigational drugs database including information on...kr/~parkkw/Lnet/ TDR Targets Database: identification and rank...1435 days ago
Perl one-liner for beginners !
...perl -pne 'tr/[A-Z]/[a-z]/' textWithUpperCase.txt > textwithoutuppercase.txt; Print only the second column of the data when using tabular as a separ...1383 days ago
10 NGS services companies around the globe !
...including bioservices tools, pipelines and workflows, compute resources, data analysis reports, and case st...The company also provides a variety of services such as oligo synthesis, database construction, genome rese...1261 days ago
Bioinformatics tools for telomere to telomere assembly !
...unt information from raw, short-read sequencing data to genotype a wide spectrum o...read transcripts that can assess the quality of data and the preprocessing pipelin...C typing and other low-complexity gene amplicon data; performs allele calling whil...993 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...pathogens study can lead to treatments for infectious diseases. Raw NGS dataReads can be saved as a Fasta...an idea of what you have and what the standard is like. If required, raw data cleanup/quality trimming. Cho...1206 days ago
Frequently used bioinformatics tools for viral genome analysis !
...gnment/Map format and SAMtools. Li, H. et al. Bioinformatics 25, 2078-9 (2009). Trimmomatic: Trimmomatic: A flexible trimmer for Illumina Sequence Data. Bolger, A. M., Lohse, M. &am...1049 days ago
Basic Structure of Snakemake Pipeline Run !
/user/snakemake-demo$ ls config.json data envs scripts slurm-240702.out Snakefile data = mock data for the snakefile to use Snakefile = name of the snakemake “formula” file Note: The def...936 days ago
Illumina based assembly pipeline steps !
...tools) Primer sequence removal (iVar; amplicon data only) Duplicate read marking...ar variants and consensus; default for amplicon data || BCFTools, BEDTools; defaul...o assembly Primer trimming (Cutadapt; amplicon data only) Choice of multiple ass...879 days ago