Introduction to Bioinformatics
Introduction to bioinformatics is a course for biologists and clinicians that would like to learn more about the...earch. The course covers many of the topics transformed by the emergence of big data a...1794 days ago
1546 days ago
New Machine Learning Packages in R
Machine Learning autokeras v1.0.1: Implements an interface to AutoKeras, an open source software librar...ling models and classifiers based on sparse matrix objects representing textual data....1498 days ago
Useful links to therapy, disease, drug and drug-target network data:
Useful links to therapy, disease, drug and drug-target network data: DrugBank: a bioinformatics...ource combining detailed drug data with comprehensive drug targe...Drug-Target Network: network data of 890 drugs and 394 target h...Thomson Investigational drugs database including information on...1432 days ago
Perl one-liner for beginners !
I often use the following arguments to perl: -e Makes the line of code be executed instead of a script -n Forc...txt > textwithoutuppercase.txt; Print only the second column of the data w...1379 days ago
10 NGS services companies around the globe !
The global NGS services market is expected to reach USD 13.1 billion by 2025...tools, pipelines and workflows, compute resources, data analysis reports, and case st...ides a variety of services such as oligo synthesis, databa...1257 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evalu...mation from raw, short-read sequencing data to genotype a wide spectrum o...scripts that can assess the quality of data and the preprocessing pipelin...and other low-complexity gene amplicon data;...990 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly method for small to med...ead to treatments for infectious diseases. Raw NGS dataReads can be saved as a Fasta...ave and what the standard is like. If required, raw data c...1202 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastoul...8-9 (2009). Trimmomatic: Trimmomatic: A flexible trimmer for Illumina Sequence Data....1045 days ago
Basic Structure of Snakemake Pipeline Run !
/user/snakemake-demo$ ls config.json data envs scripts slurm-240702.out Snakefile data = mock data for the snakefile to use Snakefile = name of the snakemake “formula” file Not...932 days ago