Tools to detect synteny blocks regions among multiple genomes
...ize annotated regions in addition to synteny regions. MicroSyn (http://www.lgm.upmc.fr/CHROnicle/SynChro.html) MicroSyn software as a means of detecting microsynteny in adjacent geno...2621 days ago
Calling narrow and broad peaks from ChIP-Seq data
Know about the state-of-the-art algorithms implemented in Strand NGS for detecting the binding sites of transcription factor (narrow peaks) and enriched regions of histone modification...3208 days ago
Next Generation Sequencing (NGS) Tutorials
...ncing http://hmg.oxfordjournals.org/content/19/R2/R227.full.pdf ============================================== NGS data analysis pipelines Detecting and annotating genetic variat...3498 days ago
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Bio++ : C Language libraries for your biological need
...ogeny problem. Syst Biol. 2007 Aug;56(4):633-42.Dutheil J, Galtier N. Detecting groups of coevolving position...theil J, Pupko T, Jean-Marie A, Galtier N. A model-based approach for detecting coevolving positions in a mol...3959 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...6, 2010. PubMedCentral [Geoseq is a web service that allows searching deep sequencing datasets with a reference sequence of a gene of interest] Detecting and annotating genetic variat...3790 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...im to reconstruct different isoforms and alternate splicing from RNA-Seq data http://cbil.upenn.edu/beers/BOTTLENECK Bottleneck is a program for detecting recent effective population s...3748 days ago
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Pack a perl program with their dependencies on Ubuntu !
...ndeldetectionlocalassembly github.com - SvABA is a method for detecting structural variants in sequen...Heng Li.... Rahul Nayak@rahul GeneMates: an R package for Detecting Horizontal Gene Co-transfer b...1522 days ago
Comment on "List of gene ontology software and tools"
Thanks for such a useful list of tools for GO study. I found FUNC: a package for detecting significant associations between gene sets and ontological annotations (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1800870/) also very useful.2985 days ago