Dynamic chromosome breakpoints !!!
...ain the genome hotspots/Evolutionary Breakpoint Regions(EBRs)/fragile regions/weak fragments/ in my next blog. Software for recombination detection: RAT http://cbr.jic.ac.uk/di...3562 days ago
2813 days ago
Live Webinar on RNA-Seq Data Analysis on 9 Nov 2016
...Seq data. The workflow includes Transcriptome / Genome alignment, Differential expression analysis with Statistical approach and Splicing events detection. Strand NGS also supports nov...2765 days ago
Structural variation: the hidden genomic treasure
...ever, compared to SNPs, accurate detection, genotyping and understanding...cal challenges related to SV/CNV detection and analysis. In our lab we a...ue to a higher resolution of new detection methods, smaller variants (be...et/) that is nice tools for both detection and visualisation of severals...2712 days ago
Software and Tools to detect structure variation with long reads !!
...akSV-Manual.txt. More at https://github.com/raphael-group/multibreak-sv Parliament: A Structural Variation Tool. Why ask a single sv-detection approach to find every varian...2617 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
...ion.tgac.ac.uk/display/NANOOK/NanoOK NanopolishNanopore analysis and genome assembly softwarehttps://github.com/jts/nanopolish nanoporeVariant-detection tool for nanopore sequence da...2330 days ago
List of motif discovery tools !
...uence section under positive evolution selection. ScanProsite Search for motifs and patterns within protein sequences. ScanProsite -- detection of PROSITE signature matches...2003 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the other is based on the Ks distribution map. Among them, Ks is defined as the average number of syn...1165 days ago
List of comparative genomics resources !
...ices Visualize gene indices of human, mouse, Arabidopsis, Zebrafish, Drosophila and Sheep. GenomeTrafac -- a whole genome resource for the detection of transcription factor bindi...687 days ago
Bioinformatics tools to explore SSRs in genomes !
...SRs. It can design primers for perfect and imperfect SSRs, and can be used to design primers for SSRs in various organisms. QDD: QDD (Quick Detection of Duplication) is a software...434 days ago