Results for "Error"
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SimLoRD: A read simulator for third generation sequencing reads
SimLoRD is a read simulator for third generation sequencing reads and is currently focused on the Pacific Biosciences SMRT error model. Reads are simulated from both strands of a provided or randomly generated reference sequence. The reference can be read from a FASTA file or randomly gener...Tags: SimLoRD, read, simulator, third, generation, sequencing, reads, Pacific, Biosciences, SMRT, error, model
2076 days ago
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte
whatshap phase -o seeWhat.vcf --reference genome.fa see.vcf genome.fa.sorted.bam This is WhatsHap 0.17 running under Python 3.6.6Traceback (most recent call last): File "/home/anaconda3/bin/whatshap", line 11, in <module> load_entry_point('whatshap==0.17', 'console_scripts', 'whatshap')(...Tags: whatshap, error, invalid, file
2012 days ago
NxRepair: error correction in de novo assemblies using Nextera Mate Pair Reads
NxRepair is a python module that automatically detects large structural errors in de novo assemblies using Nextera mate pair reads. The decector will break a contig at the site of an identified misassembly and will generate a new fasta file containing both the corrected contigs and the correct, u...Tags: NxRepair, error, correction, denovo, assembly, Nextera, Mate, Pair, Reads
1921 days ago
You can't install David Brownlee ;-)
By mistake I ask cpan to install abs, and it return this message. jitendra@jitendra-Aspire-S3-391[parallelLastz] sudo cpan install abs [ 4:43AM]Going to read '/home/jitendra/.cpan/Metadata' Database was generated on Thu, 02 May 2019 00:08:06 GMTDon't be silly, you can't install Dav...Tags: abs, cpan, install, fun, error, David Brownlee
1824 days ago
How to fix the following error while compiling MCSCanX !
detect_collinear_tandem_arrays.cc:286:17: note: suggested alternative: 'getpt' while ((c = getopt(argc, argv, "g:b:c:o:")) != -1) ^~~~~~ ...Tags: MCScanX, error, compile, bug, code, install, error
1588 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
Rcorrector has an accuracy higher than or comparable to existing methods, including the only other method (SEECER) designed for RNA-seq reads, and is more time and memory efficient. With a 5 GB memory footprint for 100 million reads, it can be run on virtually any desktop or server. The software ...Tags: Rcorrector, efficient, accurate, error, correction, Illumina, RNA-seq, reads
1545 days ago
error: mate does not occur next to it in your BAM file. How to fix it ?
*****WARNING: Query v300043428L4C001R0481272249 is marked as paired, but its mate does not occur next to it in your BAM file. Skipping.Tags: samtools, paired, pe, error, mates reads
1458 days ago
samtool error: open: fail to open file out.bam
samtools sort -o out.bam in.bamopen: No such file or directory[bam_sort_core] fail to open file out.bamTags: samtool, error, open, out, bam, ngs
1428 days ago
How to resolve the error "uuid.h: No such file or directory"
I receive following error while compiling kent ../inc/uuid.h:8:10: fatal error: uuid/uuid.h: No such file or directory #include <uuid/uuid.h> ^~~~~~~~~~~~~compilation terminated.../inc/common.mk:420: recipe for target 'uuid.o' failedmake[1]: *** [uuid.o] Error 1make[1]: Leaving directory '...Tags: kent, error, make, uuid
1204 days ago
Alienomics "environment is inconsistent" error ?
$ conda install -c jnarayan81 alienomics The environment is inconsistent, please check the package plan carefullyThe following packages are causing the inconsistency: - defaults/linux-64::jupyter==1.0.0=py37_7 - defaults/noarch::pygments==2.5.2=py_0 - defaults/noarch::jupyter_c...Tags: Alienomics, error, inconsistent, conda, package, install
1168 days ago
